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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7a09:4 (3.5) BS01 rna ? GO:0001701 ... P20042 33289941
    2 7a09:4 (3.5) BS02 rna ? GO:0001701 ... P20042 33289941
    3 7a09:4 (3.5) BS03 GTP ? GO:0001701 ... P20042 33289941
    4 7a09:C (3.5) BS01 rna ? GO:0003723 ... Q99613 33289941
    5 7a09:D (3.5) BS01 rna ? GO:0002181 ... P62244 33289941
    6 7a09:G (3.5) BS01 rna ? GO:0003723 ... P47813 33289941
    7 7a09:J (3.5) BS01 rna 3.6.5.- GO:0000054 ... P61221 33289941
    8 7a09:J (3.5) BS02 SF4 3.6.5.- GO:0000054 ... P61221 33289941
    9 7a09:J (3.5) BS03 SF4 3.6.5.- GO:0000054 ... P61221 33289941
    10 7a09:J (3.5) BS04 ADP 3.6.5.- GO:0000054 ... P61221 33289941
    11 7a09:J (3.5) BS05 ATP 3.6.5.- GO:0000054 ... P61221 33289941
    12 7a09:J (3.5) BS06 MG 3.6.5.- GO:0000054 ... P61221 33289941
    13 7a09:O (3.5) BS01 rna ? GO:0000423 ... P05198 33289941
    14 7a09:P (3.5) BS01 rna ? GO:0002181 ... P62851 33289941
    15 7a09:Q (3.5) BS01 rna ? GO:0002181 ... P62854 33289941
    16 7a09:Q (3.5) BS02 ZN ? GO:0002181 ... P62854 33289941
    17 7a09:R (3.5) BS01 rna ? GO:0000028 ... P42677 33289941
    18 7a09:S (3.5) BS01 rna ? GO:0000028 ... P62857 33289941
    19 7a09:T (3.5) BS01 rna ? GO:0003735 ... P62861 33289941
    20 7a09:U (3.5) BS01 rna ? GO:0002181 ... P62979 33289941
    21 7a09:U (3.5) BS02 ZN ? GO:0002181 ... P62979 33289941
    22 7a09:V (3.5) BS01 rna ? GO:0001891 ... P63244 33289941
    23 7a09:Y (3.5) BS01 rna 3.6.5.3 GO:0000049 ... P41091 33289941
    24 7a09:Y (3.5) BS02 GTP 3.6.5.3 GO:0000049 ... P41091 33289941
    25 7a09:Y (3.5) BS03 MG 3.6.5.3 GO:0000049 ... P41091 33289941
    26 7a09:Z (3.5) BS01 rna ? GO:0003723 ... P41567 33289941
    27 7a09:a (3.5) BS01 rna ? GO:0000028 ... P08865 33289941
    28 7a09:b (3.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33289941
    29 7a09:c (3.5) BS01 rna ? GO:0002181 ... P46781 33289941
    30 7a09:d (3.5) BS01 rna ? GO:0002181 ... P15880 33289941
    31 7a09:e (3.5) BS01 rna ? GO:0000028 ... P46782 33289941
    32 7a09:g (3.5) BS01 rna ? GO:0000462 ... P62249 33289941
    33 7a09:h (3.5) BS01 rna ? GO:0002181 ... P60866 33289941
    34 7a09:i (3.5) BS01 rna ? GO:0000028 ... P62263 33289941
    35 7a09:j (3.5) BS01 rna ? GO:0002181 ... P62266 33289941
    36 7a09:k (3.5) BS01 rna ? GO:0002181 ... P62269 33289941
    37 7a09:l (3.5) BS01 rna ? GO:0002181 ... P62273 33289941
    38 7a09:l (3.5) BS02 ZN ? GO:0002181 ... P62273 33289941
    39 7a09:m (3.5) BS01 rna ? GO:0002181 ... P62277 33289941
    40 7a09:n (3.5) BS01 rna ? GO:0002181 ... P62280 33289941
    41 7a09:o (3.5) BS01 rna ? GO:0000028 ... P62841 33289941
    42 7a09:p (3.5) BS01 rna ? GO:0002181 ... P61247 33289941
    43 7a09:q (3.5) BS01 rna ? GO:0002181 ... P62701 33289941
    44 7a09:r (3.5) BS01 rna ? GO:0000082 ... P62753 33289941
    45 7a09:s (3.5) BS01 rna ? GO:0001843 ... P62081 33289941
    46 7a09:t (3.5) BS01 rna ? GO:0000462 ... P62241 33289941
    47 7a09:u (3.5) BS01 rna ? GO:0002181 ... P46783 33289941
    48 7a09:v (3.5) BS01 rna ? GO:0002181 ... P25398 33289941
    49 7a09:w (3.5) BS01 rna ? GO:0002181 ... P08708 33289941
    50 7a09:x (3.5) BS01 rna ? GO:0000028 ... P39019 33289941
    51 7a09:z (3.5) BS01 rna ? GO:0003735 ... E7ETK0 33289941
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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