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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zym:A (3.4) BS01 rna ? GO:0000398 ... Q6P2Q9 33007253
    2 6zym:A (3.4) BS02 rna ? GO:0000398 ... Q6P2Q9 33007253
    3 6zym:A (3.4) BS03 rna ? GO:0000398 ... Q6P2Q9 33007253
    4 6zym:A (3.4) BS04 rna ? GO:0000398 ... Q6P2Q9 33007253
    5 6zym:A (3.4) BS05 rna ? GO:0000398 ... Q6P2Q9 33007253
    6 6zym:A (3.4) BS06 peptide ? GO:0000398 ... Q6P2Q9 33007253
    7 6zym:A (3.4) BS07 IHP ? GO:0000398 ... Q6P2Q9 33007253
    8 6zym:B (3.4) BS01 GTP ? GO:0000398 ... Q15029 33007253
    9 6zym:C (3.4) BS01 rna ? GO:0000122 ... Q13573 33007253
    10 6zym:D (3.4) BS01 rna ? GO:0000398 ... O43660 33007253
    11 6zym:E (3.4) BS01 rna ? GO:0000398 ... O60508 33007253
    12 6zym:L (3.4) BS01 rna ? GO:0000077 ... Q99459 33007253
    13 6zym:O (3.4) BS01 rna ? GO:0000245 ... Q9BZJ0 33007253
    14 6zym:P (3.4) BS01 rna ? GO:0003723 ... Q9NW64 33007253
    15 6zym:P (3.4) BS02 rna ? GO:0003723 ... Q9NW64 33007253
    16 6zym:P (3.4) BS03 ZN ? GO:0003723 ... Q9NW64 33007253
    17 6zym:P (3.4) BS04 ZN ? GO:0003723 ... Q9NW64 33007253
    18 6zym:P (3.4) BS05 ZN ? GO:0003723 ... Q9NW64 33007253
    19 6zym:Q (3.4) BS01 rna ? GO:0000398 ... P41223 33007253
    20 6zym:Q (3.4) BS02 ZN ? GO:0000398 ... P41223 33007253
    21 6zym:Q (3.4) BS03 ZN ? GO:0000398 ... P41223 33007253
    22 6zym:Q (3.4) BS04 ZN ? GO:0000398 ... P41223 33007253
    23 6zym:R (3.4) BS01 rna ? GO:0000398 ... Q9P013 33007253
    24 6zym:R (3.4) BS02 rna ? GO:0000398 ... Q9P013 33007253
    25 6zym:S (3.4) BS01 rna ? GO:0000398 ... Q9UQ35 33007253
    26 6zym:t (3.4) BS01 rna ? GO:0000398 ... Q9NXE8 33007253
    27 6zym:t (3.4) BS02 rna ? GO:0000398 ... Q9NXE8 33007253
    28 6zym:u (3.4) BS01 rna ? GO:0000398 ... Q9BW85 33007253
    29 6zym:u (3.4) BS02 rna ? GO:0000398 ... Q9BW85 33007253
    30 6zym:u (3.4) BS03 rna ? GO:0000398 ... Q9BW85 33007253
    31 6zym:u (3.4) BS04 rna ? GO:0000398 ... Q9BW85 33007253
    32 6zym:u (3.4) BS05 peptide ? GO:0000398 ... Q9BW85 33007253
    33 6zym:u (3.4) BS06 ZN ? GO:0000398 ... Q9BW85 33007253
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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