Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zvi:A (3.0) BS01 rna ? GO:0000054 ... P0CX55 32744497
    2 6zvi:B (3.0) BS01 rna ? GO:0000028 ... P07280 32744497
    3 6zvi:C (3.0) BS01 rna ? GO:0003723 ... P38701 32744497
    4 6zvi:E (3.0) BS01 rna ? GO:0002181 ... P0C0W1 32744497
    5 6zvi:H (3.0) BS01 rna ? GO:0000462 ... P0CX29 32744497
    6 6zvi:I (3.0) BS01 rna ? GO:0000462 ... P0CX31 32744497
    7 6zvi:J (3.0) BS01 rna ? N/A Q3E792 32744497
    8 6zvi:K (3.0) BS01 rna ? GO:0003735 ... P39939 32744497
    9 6zvi:L (3.0) BS01 rna ? GO:0000028 ... P35997 32744497
    10 6zvi:L (3.0) BS02 ZN ? GO:0000028 ... P35997 32744497
    11 6zvi:N (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 32744497
    12 6zvi:N (3.0) BS02 rna ? GO:0000028 ... Q3E7X9 32744497
    13 6zvi:O (3.0) BS01 rna ? GO:0002181 ... P41057 32744497
    14 6zvi:O (3.0) BS02 ZN ? GO:0002181 ... P41057 32744497
    15 6zvi:P (3.0) BS01 rna ? GO:0003735 ... P0CX33 32744497
    16 6zvi:Q (3.0) BS01 rna ? GO:0003735 ... P05759 32744497
    17 6zvi:R (3.0) BS01 rna ? GO:0001965 ... P38011 32744497
    18 6zvi:T (3.0) BS01 rna ? GO:0003677 ... O14467 32744497
    19 6zvi:T (3.0) BS02 rna ? GO:0003677 ... O14467 32744497
    20 6zvi:i (3.0) BS01 rna ? GO:0003735 ... P32905 32744497
    21 6zvi:j (3.0) BS01 rna ? GO:0003735 ... P33442 32744497
    22 6zvi:k (3.0) BS01 rna ? GO:0003723 ... P25443 32744497
    23 6zvi:l (3.0) BS01 rna ? GO:0000054 ... P05750 32744497
    24 6zvi:l (3.0) BS02 rna ? GO:0000054 ... P05750 32744497
    25 6zvi:m (3.0) BS01 rna ? GO:0002181 ... P0CX35 32744497
    26 6zvi:n (3.0) BS01 rna ? GO:0000028 ... P26783 32744497
    27 6zvi:o (3.0) BS01 rna ? GO:0000462 ... P0CX37 32744497
    28 6zvi:p (3.0) BS01 rna ? GO:0002181 ... P26786 32744497
    29 6zvi:q (3.0) BS01 rna ? GO:0000462 ... P0CX39 32744497
    30 6zvi:r (3.0) BS01 rna ? GO:0000462 ... O13516 32744497
    31 6zvi:s (3.0) BS01 rna ? N/A Q08745 32744497
    32 6zvi:t (3.0) BS01 rna ? GO:0000028 ... P0CX47 32744497
    33 6zvi:u (3.0) BS01 rna ? GO:0003735 ... P48589 32744497
    34 6zvi:v (3.0) BS01 rna ? GO:0000462 ... P05756 32744497
    35 6zvi:w (3.0) BS01 rna ? GO:0000028 ... P39516 32744497
    36 6zvi:x (3.0) BS01 rna ? GO:0003723 ... Q01855 32744497
    37 6zvi:y (3.0) BS01 rna ? GO:0000462 ... P0CX51 32744497
    38 6zvi:z (3.0) BS01 rna ? GO:0000028 ... P02407 32744497
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218