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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zpo:A (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    2 6zpo:B (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    3 6zpo:C (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    4 6zpo:D (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    5 6zpo:D (4.0) BS02 MG 7.1.2.2 GO:0005515 ... P00829 32900941
    6 6zpo:E (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    7 6zpo:F (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    8 6zpo:a (4.0) BS01 CDL ? GO:0005739 ... P00847 32900941
    9 6zpo:a (4.0) BS02 CDL ? GO:0005739 ... P00847 32900941
    10 6zpo:b (4.0) BS01 CDL ? GO:0015078 ... P13619 32900941
    11 6zpo:b (4.0) BS02 CDL ? GO:0015078 ... P13619 32900941
    12 6zpo:f (4.0) BS01 CDL ? GO:0005739 ... Q28851 32900941
    13 6zpo:f (4.0) BS02 CDL ? GO:0005739 ... Q28851 32900941
    14 6zpo:f (4.0) BS03 CDL ? GO:0005739 ... Q28851 32900941
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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