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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zmt:B (3.0) BS01 rna ? GO:0000028 ... P08865 32680882
    2 6zmt:C (3.0) BS01 rna ? GO:0002181 ... P61247 32680882
    3 6zmt:D (3.0) BS01 rna ? GO:0002181 ... P15880 32680882
    4 6zmt:D (3.0) BS02 peptide ? GO:0002181 ... P15880 32680882
    5 6zmt:E (3.0) BS01 rna ? GO:0002181 ... P62701 32680882
    6 6zmt:F (3.0) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    7 6zmt:F (3.0) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 32680882
    8 6zmt:G (3.0) BS01 rna ? GO:0000082 ... P62753 32680882
    9 6zmt:H (3.0) BS01 rna ? GO:0001843 ... P62081 32680882
    10 6zmt:I (3.0) BS01 rna ? GO:0000462 ... P62241 32680882
    11 6zmt:J (3.0) BS01 rna ? GO:0002181 ... P46781 32680882
    12 6zmt:K (3.0) BS01 rna ? GO:0000028 ... P46782 32680882
    13 6zmt:L (3.0) BS01 rna ? GO:0002181 ... P62280 32680882
    14 6zmt:M (3.0) BS01 rna ? GO:0002181 ... P46783 32680882
    15 6zmt:N (3.0) BS01 rna ? GO:0002181 ... P62277 32680882
    16 6zmt:O (3.0) BS01 rna ? GO:0002181 ... P25398 32680882
    17 6zmt:P (3.0) BS01 rna ? GO:0000028 ... P62263 32680882
    18 6zmt:Q (3.0) BS01 rna ? GO:0000028 ... P62841 32680882
    19 6zmt:R (3.0) BS01 rna ? GO:0000462 ... P62249 32680882
    20 6zmt:S (3.0) BS01 rna ? GO:0002181 ... P08708 32680882
    21 6zmt:T (3.0) BS01 rna ? GO:0002181 ... P62269 32680882
    22 6zmt:U (3.0) BS01 rna ? GO:0000028 ... P39019 32680882
    23 6zmt:V (3.0) BS01 rna ? GO:0002181 ... P60866 32680882
    24 6zmt:W (3.0) BS01 rna ? GO:0002181 ... P62244 32680882
    25 6zmt:X (3.0) BS01 rna ? GO:0002181 ... P62266 32680882
    26 6zmt:Y (3.0) BS01 rna ? GO:0002181 ... P62847 32680882
    27 6zmt:a (3.0) BS01 rna ? GO:0002181 ... P62851 32680882
    28 6zmt:b (3.0) BS01 rna ? GO:0000028 ... P42677 32680882
    29 6zmt:d (3.0) BS01 rna ? GO:0000028 ... P62857 32680882
    30 6zmt:e (3.0) BS01 rna ? GO:0003735 ... P62861 32680882
    31 6zmt:f (3.0) BS01 rna ? GO:0002181 ... P62273 32680882
    32 6zmt:f (3.0) BS02 ZN ? GO:0002181 ... P62273 32680882
    33 6zmt:g (3.0) BS01 rna ? GO:0002181 ... P62979 32680882
    34 6zmt:g (3.0) BS02 ZN ? GO:0002181 ... P62979 32680882
    35 6zmt:j (3.0) BS01 rna ? GO:0001891 ... P63244 32680882
    36 6zmt:u (3.0) BS01 rna ? GO:0000462 ... Q2NL82 32680882
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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