Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zlw:B (2.6) BS01 rna ? GO:0000028 ... P08865 32680882
    2 6zlw:C (2.6) BS01 rna ? GO:0002181 ... P61247 32680882
    3 6zlw:D (2.6) BS01 rna ? GO:0002181 ... P15880 32680882
    4 6zlw:E (2.6) BS01 rna ? GO:0002181 ... P62701 32680882
    5 6zlw:F (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32680882
    6 6zlw:G (2.6) BS01 rna ? GO:0000082 ... P62753 32680882
    7 6zlw:H (2.6) BS01 rna ? GO:0001843 ... P62081 32680882
    8 6zlw:I (2.6) BS01 rna ? GO:0000462 ... P62241 32680882
    9 6zlw:J (2.6) BS01 rna ? GO:0002181 ... P46781 32680882
    10 6zlw:K (2.6) BS01 rna ? GO:0000028 ... P46782 32680882
    11 6zlw:L (2.6) BS01 rna ? GO:0002181 ... P62280 32680882
    12 6zlw:M (2.6) BS01 rna ? GO:0002181 ... P46783 32680882
    13 6zlw:N (2.6) BS01 rna ? GO:0002181 ... P62277 32680882
    14 6zlw:O (2.6) BS01 rna ? GO:0002181 ... P25398 32680882
    15 6zlw:P (2.6) BS01 rna ? GO:0000028 ... P62263 32680882
    16 6zlw:Q (2.6) BS01 rna ? GO:0000028 ... P62841 32680882
    17 6zlw:R (2.6) BS01 rna ? GO:0000462 ... P62249 32680882
    18 6zlw:S (2.6) BS01 rna ? GO:0002181 ... P08708 32680882
    19 6zlw:T (2.6) BS01 rna ? GO:0002181 ... P62269 32680882
    20 6zlw:U (2.6) BS01 rna ? GO:0000028 ... P39019 32680882
    21 6zlw:V (2.6) BS01 rna ? GO:0002181 ... P60866 32680882
    22 6zlw:W (2.6) BS01 rna ? GO:0002181 ... P62244 32680882
    23 6zlw:X (2.6) BS01 rna ? GO:0002181 ... P62266 32680882
    24 6zlw:Y (2.6) BS01 rna ? GO:0002181 ... P62847 32680882
    25 6zlw:a (2.6) BS01 rna ? GO:0002181 ... P62851 32680882
    26 6zlw:b (2.6) BS01 rna ? GO:0000028 ... P42677 32680882
    27 6zlw:c (2.6) BS01 rna ? GO:0002181 ... P62854 32680882
    28 6zlw:c (2.6) BS02 ZN ? GO:0002181 ... P62854 32680882
    29 6zlw:d (2.6) BS01 rna ? GO:0000028 ... P62857 32680882
    30 6zlw:e (2.6) BS01 rna ? GO:0003735 ... P62861 32680882
    31 6zlw:f (2.6) BS01 rna ? GO:0002181 ... P62273 32680882
    32 6zlw:f (2.6) BS02 ZN ? GO:0002181 ... P62273 32680882
    33 6zlw:g (2.6) BS01 rna ? GO:0002181 ... P62979 32680882
    34 6zlw:i (2.6) BS01 rna 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 32680882
    35 6zlw:j (2.6) BS01 rna ? GO:0001891 ... P63244 32680882
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218