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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zgp:A (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    2 6zgp:A (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    3 6zgp:A (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    4 6zgp:B (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    5 6zgp:B (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    6 6zgp:B (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    7 6zgp:C (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    8 6zgp:C (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    9 6zgp:C (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    10 6zgp:D (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    11 6zgp:D (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    12 6zgp:D (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    13 6zgp:E (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    14 6zgp:E (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    15 6zgp:E (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    16 6zgp:F (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    17 6zgp:F (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    18 6zgp:F (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    19 6zgp:G (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    20 6zgp:G (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    21 6zgp:G (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    22 6zgp:H (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    23 6zgp:H (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    24 6zgp:H (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    25 6zgp:I (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    26 6zgp:I (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    27 6zgp:I (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    28 6zgp:J (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    29 6zgp:J (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    30 6zgp:J (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    31 6zgp:K (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    32 6zgp:K (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    33 6zgp:K (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    34 6zgp:L (2.01) BS01 FE 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    35 6zgp:L (2.01) BS02 FES 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989
    36 6zgp:L (2.01) BS03 QKQ 1.14.13.239 GO:0004497 ... A0A059ZPP5 33158989 MOAD: Ki=1.09uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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