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BioLiP
Download all results in tab-seperated text for 92 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ywy:0 (3.05) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    2 6ywy:0 (3.05) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    3 6ywy:00 (3.05) BS01 rna N/A GO:0005739 ... N/A 33056988
    4 6ywy:1 (3.05) BS01 rna N/A N/A N/A 33056988
    5 6ywy:11 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    6 6ywy:2 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    7 6ywy:2 (3.05) BS02 NAD N/A GO:0003735 ... N/A 33056988
    8 6ywy:22 (3.05) BS01 rna ? GO:0005739 ... Q7SHR6 33056988
    9 6ywy:22 (3.05) BS02 rna ? GO:0005739 ... Q7SHR6 33056988
    10 6ywy:3 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    11 6ywy:33 (3.05) BS01 rna ? N/A Q9HE52 33056988
    12 6ywy:4 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    13 6ywy:44 (3.05) BS01 rna N/A GO:0004784 ... N/A 33056988
    14 6ywy:5 (3.05) BS01 rna N/A GO:0003725 ... N/A 33056988
    15 6ywy:6 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    16 6ywy:66 (3.05) BS01 rna ? GO:0003735 ... Q7SHB2 33056988
    17 6ywy:7 (3.05) BS01 rna ? GO:0003735 ... Q7S518 33056988
    18 6ywy:8 (3.05) BS01 rna ? GO:0005739 ... Q7S711 33056988
    19 6ywy:9 (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    20 6ywy:AA (3.05) BS01 rna N/A N/A N/A 33056988
    21 6ywy:B (3.05) BS01 rna N/A GO:0003723 ... N/A 33056988
    22 6ywy:BB (3.05) BS01 rna ? GO:0003735 ... V5ILE0 33056988
    23 6ywy:BB (3.05) BS02 MG ? GO:0003735 ... V5ILE0 33056988
    24 6ywy:C (3.05) BS01 rna ? GO:0003735 ... Q873B3 33056988
    25 6ywy:CC (3.05) BS01 rna ? GO:0005739 ... A0A1W5YJW8 33056988
    26 6ywy:D (3.05) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    27 6ywy:DD (3.05) BS01 rna N/A GO:0003723 ... N/A 33056988
    28 6ywy:E (3.05) BS01 rna ? GO:0003723 ... Q96U12 33056988
    29 6ywy:E (3.05) BS02 rna ? GO:0003723 ... Q96U12 33056988
    30 6ywy:E (3.05) BS03 NAD ? GO:0003723 ... Q96U12 33056988
    31 6ywy:EE (3.05) BS01 rna ? GO:0003723 ... Q8X048 33056988
    32 6ywy:F (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    33 6ywy:FF (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    34 6ywy:G (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    35 6ywy:GG (3.05) BS01 rna N/A GO:0006412 ... N/A 33056988
    36 6ywy:GG (3.05) BS02 rna N/A GO:0006412 ... N/A 33056988
    37 6ywy:H (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    38 6ywy:HH (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    39 6ywy:I (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    40 6ywy:I (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    41 6ywy:II (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    42 6ywy:II (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    43 6ywy:J (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    44 6ywy:JJ (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    45 6ywy:K (3.05) BS01 rna ? GO:0003735 ... Q8X081 33056988
    46 6ywy:K (3.05) BS02 MG ? GO:0003735 ... Q8X081 33056988
    47 6ywy:KK (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    48 6ywy:KK (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    49 6ywy:L (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    50 6ywy:LL (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    51 6ywy:M (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    52 6ywy:MM (3.05) BS01 rna ? GO:0003676 ... Q6MVY0 33056988
    53 6ywy:MM (3.05) BS02 rna ? GO:0003676 ... Q6MVY0 33056988
    54 6ywy:N (3.05) BS01 rna ? GO:0003735 ... Q6MVF2 33056988
    55 6ywy:NN (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    56 6ywy:O (3.05) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    57 6ywy:OO (3.05) BS01 rna ? GO:0003735 ... Q8X067 33056988
    58 6ywy:P (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    59 6ywy:PP (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    60 6ywy:Q (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    61 6ywy:QQ (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    62 6ywy:R (3.05) BS01 rna ? GO:0003735 ... Q8X0Q2 33056988
    63 6ywy:RR (3.05) BS01 rna ? GO:0003735 ... Q872A7 33056988
    64 6ywy:S (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    65 6ywy:S (3.05) BS02 MG N/A GO:0003735 ... N/A 33056988
    66 6ywy:SS (3.05) BS01 rna N/A GO:0003723 ... N/A 33056988
    67 6ywy:T (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    68 6ywy:TT (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    69 6ywy:TT (3.05) BS02 rna N/A GO:0003735 ... N/A 33056988
    70 6ywy:U (3.05) BS01 rna ? GO:0003735 ... Q8X098 33056988
    71 6ywy:UU (3.05) BS01 rna ? GO:0003735 ... Q873E4 33056988
    72 6ywy:V (3.05) BS01 rna ? GO:0003735 ... Q9C2E5 33056988
    73 6ywy:V (3.05) BS02 rna ? GO:0003735 ... Q9C2E5 33056988
    74 6ywy:VV (3.05) BS01 rna ? GO:0005739 ... Q7SHR9 33056988
    75 6ywy:W (3.05) BS01 rna ? GO:0003735 ... Q9HFL0 33056988
    76 6ywy:W (3.05) BS02 ZN ? GO:0003735 ... Q9HFL0 33056988
    77 6ywy:WW (3.05) BS01 rna ? GO:0005739 ... Q7RYW7 33056988
    78 6ywy:X (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    79 6ywy:XX (3.05) BS01 rna ? GO:0003735 ... Q7SD06 33056988
    80 6ywy:XX (3.05) BS02 ATP ? GO:0003735 ... Q7SD06 33056988
    81 6ywy:Y (3.05) BS01 rna ? GO:0003735 ... Q96U95 33056988
    82 6ywy:YY (3.05) BS01 rna N/A N/A N/A 33056988
    83 6ywy:ZZ (3.05) BS01 rna ? GO:0003735 ... Q9P5J2 33056988
    84 6ywy:a (3.05) BS01 rna ? GO:0003735 ... Q8NIR6 33056988
    85 6ywy:b (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    86 6ywy:c (3.05) BS01 rna N/A N/A N/A 33056988
    87 6ywy:d (3.05) BS01 rna N/A GO:0000002 ... N/A 33056988
    88 6ywy:e (3.05) BS01 rna ? GO:0003735 ... Q870V5 33056988
    89 6ywy:f (3.05) BS01 rna ? GO:0003735 ... Q6M9C4 33056988
    90 6ywy:g (3.05) BS01 rna N/A GO:0003735 ... N/A 33056988
    91 6ywy:i (3.05) BS01 rna N/A N/A N/A 33056988
    92 6ywy:j (3.05) BS01 rna ? GO:0003735 ... Q7RWZ7 33056988
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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