Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yws:0 (2.74) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    2 6yws:0 (2.74) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    3 6yws:1 (2.74) BS01 rna ? GO:0005739 ... Q7RXV8 33056988
    4 6yws:2 (2.74) BS01 rna N/A GO:0003735 ... N/A 33056988
    5 6yws:2 (2.74) BS02 NAD N/A GO:0003735 ... N/A 33056988
    6 6yws:3 (2.74) BS01 rna ? GO:0003735 ... Q7S5W0 33056988
    7 6yws:4 (2.74) BS01 rna ? GO:0003735 ... Q7S300 33056988
    8 6yws:5 (2.74) BS01 rna ? GO:0003723 ... Q7SA88 33056988
    9 6yws:6 (2.74) BS01 rna ? GO:0003735 ... Q7S1Z3 33056988
    10 6yws:7 (2.74) BS01 rna ? GO:0003735 ... Q7S518 33056988
    11 6yws:8 (2.74) BS01 rna ? GO:0005739 ... Q7S711 33056988
    12 6yws:9 (2.74) BS01 rna ? GO:0003735 ... Q7S1R6 33056988
    13 6yws:B (2.74) BS01 rna ? GO:0003723 ... Q7SCX7 33056988
    14 6yws:C (2.74) BS01 rna ? GO:0003735 ... Q1K8T6 33056988
    15 6yws:D (2.74) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    16 6yws:E (2.74) BS01 rna ? GO:0003723 ... Q1K6P0 33056988
    17 6yws:E (2.74) BS02 NAD ? GO:0003723 ... Q1K6P0 33056988
    18 6yws:F (2.74) BS01 rna ? GO:0003735 ... Q7RZF0 33056988
    19 6yws:G (2.74) BS01 rna ? GO:0003735 ... Q7S054 33056988
    20 6yws:H (2.74) BS01 rna ? GO:0003729 ... Q7SBV6 33056988
    21 6yws:I (2.74) BS01 rna ? GO:0003735 ... Q7SBJ8 33056988
    22 6yws:J (2.74) BS01 rna N/A GO:0003735 ... N/A 33056988
    23 6yws:K (2.74) BS01 rna ? GO:0003735 ... F5HIJ5 33056988
    24 6yws:K (2.74) BS02 MG ? GO:0003735 ... F5HIJ5 33056988
    25 6yws:L (2.74) BS01 rna ? GO:0003735 ... Q1K8C8 33056988
    26 6yws:M (2.74) BS01 rna ? GO:0003735 ... Q7RYW8 33056988
    27 6yws:N (2.74) BS01 rna ? GO:0003735 ... Q7SGE5 33056988
    28 6yws:O (2.74) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    29 6yws:P (2.74) BS01 rna ? GO:0003735 ... Q7SA60 33056988
    30 6yws:Q (2.74) BS01 rna ? GO:0003735 ... Q7RXU7 33056988
    31 6yws:R (2.74) BS01 rna ? GO:0003735 ... Q1K730 33056988
    32 6yws:S (2.74) BS01 rna ? GO:0003735 ... Q7SC44 33056988
    33 6yws:T (2.74) BS01 rna ? GO:0003735 ... Q7S910 33056988
    34 6yws:U (2.74) BS01 rna ? GO:0003735 ... Q1K8Y7 33056988
    35 6yws:V (2.74) BS01 rna ? GO:0003735 ... Q1K7L7 33056988
    36 6yws:W (2.74) BS01 rna ? GO:0003735 ... Q1K4P1 33056988
    37 6yws:W (2.74) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    38 6yws:X (2.74) BS01 rna ? GO:0003735 ... V5IM60 33056988
    39 6yws:Y (2.74) BS01 rna ? GO:0003735 ... Q96U95 33056988
    40 6yws:a (2.74) BS01 rna ? GO:0003735 ... Q1K6U7 33056988
    41 6yws:b (2.74) BS01 rna N/A GO:0003735 ... N/A 33056988
    42 6yws:c (2.74) BS01 rna ? GO:0003735 ... U9W8F2 33056988
    43 6yws:d (2.74) BS01 rna ? GO:0000002 ... Q7RYM5 33056988
    44 6yws:e (2.74) BS01 rna ? GO:0003735 ... Q1K699 33056988
    45 6yws:f (2.74) BS01 rna ? GO:0003735 ... Q7RZ62 33056988
    46 6yws:g (2.74) BS01 rna ? GO:0003735 ... Q7RX40 33056988
    47 6yws:h (2.74) BS01 rna ? GO:0003735 ... Q7SGH0 33056988
    48 6yws:i (2.74) BS01 rna ? GO:0003735 ... Q7SCZ3 33056988
    49 6yws:j (2.74) BS01 rna ? GO:0003735 ... Q7RWZ7 33056988
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218