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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yst:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 32796827
    2 6yst:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 32796827
    3 6yst:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 32796827
    4 6yst:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 32796827
    5 6yst:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 32796827
    6 6yst:4 (3.2) BS02 MG ? GO:0002181 ... P0A7Q6 32796827
    7 6yst:4 (3.2) BS03 ZN ? GO:0002181 ... P0A7Q6 32796827
    8 6yst:5 (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    9 6yst:6 (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    10 6yst:6 (3.2) BS02 MG N/A GO:0003735 ... N/A 32796827
    11 6yst:6 (3.2) BS03 ZN N/A GO:0003735 ... N/A 32796827
    12 6yst:C (3.2) BS01 rna ? GO:0000027 ... P60422 32796827
    13 6yst:C (3.2) BS02 rna ? GO:0000027 ... P60422 32796827
    14 6yst:D (3.2) BS01 rna ? GO:0000027 ... P60438 32796827
    15 6yst:E (3.2) BS01 rna ? GO:0001070 ... P60723 32796827
    16 6yst:E (3.2) BS02 peptide ? GO:0001070 ... P60723 32796827
    17 6yst:F (3.2) BS01 rna ? GO:0000027 ... P62399 32796827
    18 6yst:F (3.2) BS02 rna ? GO:0000027 ... P62399 32796827
    19 6yst:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 32796827
    20 6yst:H (3.2) BS01 rna ? GO:0002181 ... P0A7R1 32796827
    21 6yst:I (3.2) BS01 rna ? GO:0000027 ... P0A7J7 32796827
    22 6yst:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 32796827
    23 6yst:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 32796827
    24 6yst:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 32796827
    25 6yst:L (3.2) BS01 rna ? GO:0002181 ... P02413 32796827
    26 6yst:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 32796827
    27 6yst:M (3.2) BS02 rna ? GO:0000027 ... P0ADY7 32796827
    28 6yst:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 32796827
    29 6yst:O (3.2) BS01 rna ? GO:0002181 ... P0C018 32796827
    30 6yst:O (3.2) BS02 rna ? GO:0002181 ... P0C018 32796827
    31 6yst:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 32796827
    32 6yst:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 32796827
    33 6yst:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 32796827
    34 6yst:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 32796827
    35 6yst:S (3.2) BS01 rna ? GO:0002181 ... P61175 32796827
    36 6yst:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 32796827
    37 6yst:U (3.2) BS01 rna ? GO:0000027 ... P60624 32796827
    38 6yst:V (3.2) BS01 rna ? GO:0000027 ... P68919 32796827
    39 6yst:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 32796827
    40 6yst:W (3.2) BS02 rna ? GO:0000027 ... P0A7L8 32796827
    41 6yst:X (3.2) BS01 rna ? GO:0003735 ... A0A0H3ENK5 32796827
    42 6yst:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 32796827
    43 6yst:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 32796827
    44 6yst:Z (3.2) BS02 rna ? GO:0000027 ... P0AG51 32796827
    45 6yst:b (3.2) BS01 rna ? GO:0003735 ... C3TPN2 32796827
    46 6yst:c (3.2) BS01 rna ? GO:0000028 ... C3SQX2 32796827
    47 6yst:d (3.2) BS01 rna ? GO:0003723 ... C3SR62 32796827
    48 6yst:e (3.2) BS01 rna ? GO:0000028 ... C3SR27 32796827
    49 6yst:f (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    50 6yst:g (3.2) BS01 rna N/A GO:0003723 ... N/A 32796827
    51 6yst:h (3.2) BS01 rna ? GO:0000028 ... C3SR12 32796827
    52 6yst:i (3.2) BS01 rna ? GO:0000028 ... C3SRY2 32796827
    53 6yst:i (3.2) BS02 rna ? GO:0000028 ... C3SRY2 32796827
    54 6yst:j (3.2) BS01 rna ? GO:0000028 ... C3SQT7 32796827
    55 6yst:k (3.2) BS01 rna ? GO:0000028 ... C3SR57 32796827
    56 6yst:l (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    57 6yst:m (3.2) BS01 rna ? GO:0000028 ... C3SR52 32796827
    58 6yst:n (3.2) BS01 rna N/A GO:0003735 ... N/A 32796827
    59 6yst:o (3.2) BS01 rna ? GO:0000028 ... C3SSQ7 32796827
    60 6yst:o (3.2) BS02 rna ? GO:0000028 ... C3SSQ7 32796827
    61 6yst:p (3.2) BS01 rna ? GO:0000028 ... C3SYP2 32796827
    62 6yst:q (3.2) BS01 rna ? GO:0000028 ... C3SQY7 32796827
    63 6yst:r (3.2) BS01 rna ? GO:0000028 ... C3SFP7 32796827
    64 6yst:s (3.2) BS01 rna ? GO:0000028 ... C3SQW2 32796827
    65 6yst:s (3.2) BS02 rna ? GO:0000028 ... C3SQW2 32796827
    66 6yst:t (3.2) BS01 rna ? GO:0000028 ... C3TRH7 32796827
    67 6yst:u (3.2) BS01 rna ? GO:0000028 ... C3STZ7 32796827
    68 6yst:y (3.2) BS01 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    69 6yst:y (3.2) BS02 rna 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    70 6yst:y (3.2) BS03 peptide 3.1.1.29 GO:0003747 ... A0A024L8R9 32796827
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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