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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ysr:0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 32796827
    2 6ysr:1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 32796827
    3 6ysr:2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 32796827
    4 6ysr:3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 32796827
    5 6ysr:4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 32796827
    6 6ysr:4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 32796827
    7 6ysr:5 (3.1) BS01 rna N/A GO:0003735 ... N/A 32796827
    8 6ysr:6 (3.1) BS01 rna N/A GO:0003735 ... N/A 32796827
    9 6ysr:6 (3.1) BS02 ZN N/A GO:0003735 ... N/A 32796827
    10 6ysr:C (3.1) BS01 rna ? GO:0000027 ... P60422 32796827
    11 6ysr:C (3.1) BS02 rna ? GO:0000027 ... P60422 32796827
    12 6ysr:D (3.1) BS01 rna ? GO:0000027 ... P60438 32796827
    13 6ysr:E (3.1) BS01 rna ? GO:0001070 ... P60723 32796827
    14 6ysr:F (3.1) BS01 rna ? GO:0000027 ... P62399 32796827
    15 6ysr:F (3.1) BS02 rna ? GO:0000027 ... P62399 32796827
    16 6ysr:F (3.1) BS03 rna ? GO:0000027 ... P62399 32796827
    17 6ysr:G (3.1) BS01 rna ? GO:0000027 ... P0AG55 32796827
    18 6ysr:H (3.1) BS01 rna ? GO:0002181 ... P0A7R1 32796827
    19 6ysr:I (3.1) BS01 rna ? GO:0000027 ... P0A7J7 32796827
    20 6ysr:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 32796827
    21 6ysr:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 32796827
    22 6ysr:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 32796827
    23 6ysr:L (3.1) BS01 rna ? GO:0002181 ... P02413 32796827
    24 6ysr:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 32796827
    25 6ysr:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 32796827
    26 6ysr:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 32796827
    27 6ysr:O (3.1) BS01 rna ? GO:0002181 ... P0C018 32796827
    28 6ysr:O (3.1) BS02 rna ? GO:0002181 ... P0C018 32796827
    29 6ysr:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 32796827
    30 6ysr:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 32796827
    31 6ysr:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 32796827
    32 6ysr:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 32796827
    33 6ysr:S (3.1) BS01 rna ? GO:0002181 ... P61175 32796827
    34 6ysr:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 32796827
    35 6ysr:U (3.1) BS01 rna ? GO:0000027 ... P60624 32796827
    36 6ysr:V (3.1) BS01 rna ? GO:0000027 ... P68919 32796827
    37 6ysr:W (3.1) BS01 rna ? GO:0000027 ... P0A7L8 32796827
    38 6ysr:W (3.1) BS02 rna ? GO:0000027 ... P0A7L8 32796827
    39 6ysr:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 32796827
    40 6ysr:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 32796827
    41 6ysr:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 32796827
    42 6ysr:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 32796827
    43 6ysr:b (3.1) BS01 rna ? GO:0003735 ... C3TPN2 32796827
    44 6ysr:c (3.1) BS01 rna ? GO:0000028 ... C3SQX2 32796827
    45 6ysr:c (3.1) BS02 rna ? GO:0000028 ... C3SQX2 32796827
    46 6ysr:d (3.1) BS01 rna ? GO:0003723 ... C3SR62 32796827
    47 6ysr:e (3.1) BS01 rna ? GO:0000028 ... C3SR27 32796827
    48 6ysr:f (3.1) BS01 rna N/A GO:0003735 ... N/A 32796827
    49 6ysr:g (3.1) BS01 rna N/A GO:0003723 ... N/A 32796827
    50 6ysr:g (3.1) BS02 MG N/A GO:0003723 ... N/A 32796827
    51 6ysr:h (3.1) BS01 rna ? GO:0000028 ... C3SR12 32796827
    52 6ysr:i (3.1) BS01 rna ? GO:0000028 ... C3SRY2 32796827
    53 6ysr:i (3.1) BS02 rna ? GO:0000028 ... C3SRY2 32796827
    54 6ysr:j (3.1) BS01 rna ? GO:0000028 ... C3SQT7 32796827
    55 6ysr:k (3.1) BS01 rna ? GO:0000028 ... C3SR57 32796827
    56 6ysr:l (3.1) BS01 rna ? GO:0000028 ... C3SQR7 32796827
    57 6ysr:m (3.1) BS01 rna ? GO:0000028 ... C3SR52 32796827
    58 6ysr:n (3.1) BS01 rna ? GO:0003735 ... C3SR07 32796827
    59 6ysr:o (3.1) BS01 rna ? GO:0000028 ... C3SSQ7 32796827
    60 6ysr:o (3.1) BS02 rna ? GO:0000028 ... C3SSQ7 32796827
    61 6ysr:p (3.1) BS01 rna ? GO:0000028 ... C3SYP2 32796827
    62 6ysr:q (3.1) BS01 rna ? GO:0000028 ... C3SQY7 32796827
    63 6ysr:r (3.1) BS01 rna ? GO:0000028 ... C3SFP7 32796827
    64 6ysr:s (3.1) BS01 rna ? GO:0000028 ... C3SQW2 32796827
    65 6ysr:t (3.1) BS01 rna ? GO:0000028 ... C3TRH7 32796827
    66 6ysr:u (3.1) BS01 rna ? GO:0000028 ... C3STZ7 32796827
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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