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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yny:A (2.7) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    2 6yny:A1 (2.7) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    3 6yny:A1 (2.7) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    4 6yny:A2 (2.7) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    5 6yny:A2 (2.7) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    6 6yny:B1 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    7 6yny:B2 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    8 6yny:C1 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    9 6yny:C2 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    10 6yny:D1 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    11 6yny:D1 (2.7) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    12 6yny:D2 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    13 6yny:D2 (2.7) BS02 MG 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    14 6yny:E (2.7) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    15 6yny:E1 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    16 6yny:E2 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    17 6yny:G (2.7) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    18 6yny:G (2.7) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    19 6yny:H (2.7) BS01 ATP ? N/A I7MCZ0 33093501
    20 6yny:I (2.7) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    21 6yny:K (2.7) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    22 6yny:a (2.7) BS01 UQ8 ? GO:0005739 ... Q951C1 33093501
    23 6yny:e (2.7) BS01 NAD ? GO:0005739 ... I7LVQ8 33093501
    24 6yny:g (2.7) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    25 6yny:g (2.7) BS02 MG ? GO:0016020 ... I7M8Q3 33093501
    26 6yny:h (2.7) BS01 ATP ? N/A I7MCZ0 33093501
    27 6yny:i (2.7) BS01 UQ8 ? GO:0016020 ... I7LZW2 33093501
    28 6yny:k (2.7) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    29 6yny:l (2.7) BS01 UQ8 ? N/A I7MCQ6 33093501
    30 6yny:m (2.7) BS01 UQ8 ? N/A I7M980 33093501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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