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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yhs:A (2.7) BS01 rna ? GO:0002181 ... D0CD00 32857965
    2 6yhs:B (2.7) BS01 rna ? GO:0003735 ... D0CCZ7 32857965
    3 6yhs:C (2.7) BS01 rna ? GO:0003735 ... D0CCZ8 32857965
    4 6yhs:D (2.7) BS01 rna ? GO:0000049 ... D0CD09 32857965
    5 6yhs:D (2.7) BS02 rna ? GO:0000049 ... D0CD09 32857965
    6 6yhs:E (2.7) BS01 rna ? GO:0002181 ... D0CD12 32857965
    7 6yhs:F (2.7) BS01 rna ? GO:0003729 ... D0CG35 32857965
    8 6yhs:G (2.7) BS01 rna ? GO:0003735 ... D0CD07 32857965
    9 6yhs:H (2.7) BS01 rna ? GO:0003735 ... D0CD16 32857965
    10 6yhs:I (2.7) BS01 rna ? GO:0000049 ... D0CD04 32857965
    11 6yhs:I (2.7) BS02 rna ? GO:0000049 ... D0CD04 32857965
    12 6yhs:J (2.7) BS01 rna ? GO:0003735 ... D0CD23 32857965
    13 6yhs:K (2.7) BS01 rna ? GO:0003735 ... D0CD13 32857965
    14 6yhs:K (2.7) BS02 rna ? GO:0003735 ... D0CD13 32857965
    15 6yhs:L (2.7) BS01 rna ? GO:0003735 ... D0CCR8 32857965
    16 6yhs:M (2.7) BS01 rna ? GO:0000027 ... D0CA76 32857965
    17 6yhs:N (2.7) BS01 rna ? GO:0003723 ... D0CDQ6 32857965
    18 6yhs:O (2.7) BS01 rna ? GO:0003735 ... D0CD02 32857965
    19 6yhs:P (2.7) BS01 rna ? GO:0000027 ... D0CCZ9 32857965
    20 6yhs:Q (2.7) BS01 rna ? GO:0003723 ... D0CD08 32857965
    21 6yhs:R (2.7) BS01 rna ? GO:0003723 ... D0C9L7 32857965
    22 6yhs:S (2.7) BS01 rna ? GO:0003735 ... D0CDQ7 32857965
    23 6yhs:S (2.7) BS02 rna ? GO:0003735 ... D0CDQ7 32857965
    24 6yhs:T (2.7) BS01 rna ? GO:0003735 ... D0CAL0 32857965
    25 6yhs:U (2.7) BS01 rna ? GO:0003735 ... D0CD05 32857965
    26 6yhs:V (2.7) BS01 rna ? GO:0003735 ... D0CD15 32857965
    27 6yhs:V (2.7) BS02 rna ? GO:0003735 ... D0CD15 32857965
    28 6yhs:X (2.7) BS01 rna ? GO:0003735 ... D0C9K5 32857965
    29 6yhs:Y (2.7) BS01 rna ? GO:0003735 ... D0CAL1 32857965
    30 6yhs:Z (2.7) BS01 rna ? GO:0003735 ... D0CG06 32857965
    31 6yhs:a (2.7) BS01 rna ? GO:0003735 ... D0CA77 32857965
    32 6yhs:b (2.7) BS01 rna ? GO:0003735 ... D0CD18 32857965
    33 6yhs:b (2.7) BS02 ZN ? GO:0003735 ... D0CD18 32857965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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