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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ybw:B (3.1) BS01 rna ? GO:0002181 ... P62280 32883864
    2 6ybw:C (3.1) BS01 rna ? GO:0002181 ... P62701 32883864
    3 6ybw:D (3.1) BS01 rna ? GO:0002181 ... P46781 32883864
    4 6ybw:E (3.1) BS01 rna ? GO:0002181 ... P62266 32883864
    5 6ybw:F (3.1) BS01 rna ? GO:0003735 ... P62861 32883864
    6 6ybw:G (3.1) BS01 rna ? GO:0001843 ... P62081 32883864
    7 6ybw:H (3.1) BS01 rna ? GO:0000028 ... P42677 32883864
    8 6ybw:I (3.1) BS01 rna ? GO:0002181 ... P62277 32883864
    9 6ybw:J (3.1) BS01 rna ? GO:0002181 ... P62244 32883864
    10 6ybw:L (3.1) BS01 rna ? GO:0002181 ... P15880 32883864
    11 6ybw:M (3.1) BS01 rna ? GO:0002181 ... P08708 32883864
    12 6ybw:N (3.1) BS01 rna ? GO:0000028 ... P08865 32883864
    13 6ybw:O (3.1) BS01 rna ? GO:0002181 ... P61247 32883864
    14 6ybw:P (3.1) BS01 rna ? GO:0000028 ... P62263 32883864
    15 6ybw:Q (3.1) BS01 rna ? GO:0002181 ... P62854 32883864
    16 6ybw:Q (3.1) BS02 rna ? GO:0002181 ... P62854 32883864
    17 6ybw:R (3.1) BS01 rna ? GO:0000462 ... P62241 32883864
    18 6ybw:S (3.1) BS01 rna ? GO:0000082 ... P62753 32883864
    19 6ybw:T (3.1) BS01 rna ? GO:0002181 ... P62847 32883864
    20 6ybw:p (3.1) BS01 rna ? GO:0003723 ... P41567 32883864
    21 6ybw:q (3.1) BS01 rna ? GO:0000049 ... P47813 32883864
    22 6ybw:y (3.1) BS01 rna ? GO:0001732 ... Q99613 32883864
    23 6ybw:z (3.1) BS01 rna ? GO:0001732 ... O75822 32883864
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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