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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yam:A (3.6) BS01 rna ? GO:0003676 ... G1T2G4 N/A
    2 6yam:A (3.6) BS02 rna ? GO:0003676 ... G1T2G4 N/A
    3 6yam:B (3.6) BS01 rna N/A GO:0000049 ... N/A N/A
    4 6yam:C (3.6) BS01 rna ? GO:0003735 ... G1TLT8 N/A
    5 6yam:D (3.6) BS01 rna ? GO:0003735 ... G1TN72 N/A
    6 6yam:E (3.6) BS01 rna N/A GO:0003723 ... N/A N/A
    7 6yam:F (3.6) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 N/A
    8 6yam:G (3.6) BS01 rna ? GO:0003723 ... G1TK17 N/A
    9 6yam:H (3.6) BS01 rna ? GO:0003723 ... U3KMN4 N/A
    10 6yam:H (3.6) BS02 rna ? GO:0003723 ... U3KMN4 N/A
    11 6yam:I (3.6) BS01 rna ? GO:0000082 ... G1TM55 N/A
    12 6yam:J (3.6) BS01 rna ? GO:0003735 ... G1SVB0 N/A
    13 6yam:K (3.6) BS01 rna ? GO:0000462 ... G1TJW1 N/A
    14 6yam:L (3.6) BS01 rna ? GO:0003723 ... B7NZS8 N/A
    15 6yam:M (3.6) BS01 rna ? N/A G1T168 N/A
    16 6yam:M (3.6) BS02 rna ? N/A G1T168 N/A
    17 6yam:N (3.6) BS01 rna ? GO:0003735 ... G1TRM4 N/A
    18 6yam:O (3.6) BS01 rna ? GO:0003735 ... G1SFR8 N/A
    19 6yam:P (3.6) BS01 rna ? GO:0003735 ... G1SP51 N/A
    20 6yam:Q (3.6) BS01 rna ? GO:0000028 ... G1T1F0 N/A
    21 6yam:R (3.6) BS01 rna ? GO:0000028 ... G1U0Q2 N/A
    22 6yam:R (3.6) BS02 rna ? GO:0000028 ... G1U0Q2 N/A
    23 6yam:S (3.6) BS01 rna ? GO:0000462 ... G1SGX4 N/A
    24 6yam:T (3.6) BS01 rna ? GO:0003735 ... G1TU13 N/A
    25 6yam:U (3.6) BS01 rna ? GO:0003676 ... G1TPG3 N/A
    26 6yam:U (3.6) BS02 rna ? GO:0003676 ... G1TPG3 N/A
    27 6yam:V (3.6) BS01 rna ? GO:0000028 ... G1TN62 N/A
    28 6yam:W (3.6) BS01 rna ? GO:0003723 ... G1SIZ2 N/A
    29 6yam:Y (3.6) BS01 rna ? GO:0003735 ... G1TG89 N/A
    30 6yam:Z (3.6) BS01 rna ? GO:0003735 ... G1SZ47 N/A
    31 6yam:a (3.6) BS01 rna ? GO:0003735 ... G1TS40 N/A
    32 6yam:b (3.6) BS01 rna ? GO:0003729 ... G1TFE8 N/A
    33 6yam:b (3.6) BS02 rna ? GO:0003729 ... G1TFE8 N/A
    34 6yam:c (3.6) BS01 rna ? GO:0000028 ... G1TZ76 N/A
    35 6yam:d (3.6) BS01 rna ? GO:0000028 ... G1TIB4 N/A
    36 6yam:d (3.6) BS02 rna ? GO:0000028 ... G1TIB4 N/A
    37 6yam:e (3.6) BS01 rna ? GO:0003735 ... G1U7M4 N/A
    38 6yam:f (3.6) BS01 rna ? GO:0003735 ... G1SK22 N/A
    39 6yam:g (3.6) BS01 rna ? GO:0001891 ... G1SJB4 N/A
    40 6yam:i (3.6) BS01 rna ? GO:0003735 ... G1T8A2 N/A
    41 6yam:i (3.6) BS02 rna ? GO:0003735 ... G1T8A2 N/A
    42 6yam:j (3.6) BS01 rna N/A GO:0003723 ... N/A N/A
    43 6yam:j (3.6) BS02 rna N/A GO:0003723 ... N/A N/A
    44 6yam:j (3.6) BS03 rna N/A GO:0003723 ... N/A N/A
    45 6yam:k (3.6) BS01 rna N/A GO:0005524 ... N/A N/A
    46 6yam:k (3.6) BS02 SF4 N/A GO:0005524 ... N/A N/A
    47 6yam:k (3.6) BS03 SF4 N/A GO:0005524 ... N/A N/A
    48 6yam:k (3.6) BS04 GNP N/A GO:0005524 ... N/A N/A
    49 6yam:k (3.6) BS05 GNP N/A GO:0005524 ... N/A N/A
    50 6yam:n (3.6) BS01 rna ? N/A G1TDB3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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