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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6y6x:LA (2.8) BS01 rna ? GO:0002181 ... P62917 32601485
    2 6y6x:LA (2.8) BS02 MG ? GO:0002181 ... P62917 32601485
    3 6y6x:LB (2.8) BS01 rna ? GO:0002181 ... P39023 32601485
    4 6y6x:LC (2.8) BS01 rna ? GO:0003735 ... P36578 32601485
    5 6y6x:LC (2.8) BS02 rna ? GO:0003735 ... P36578 32601485
    6 6y6x:LD (2.8) BS01 rna ? GO:0000027 ... P46777 32601485
    7 6y6x:LD (2.8) BS02 rna ? GO:0000027 ... P46777 32601485
    8 6y6x:LE (2.8) BS01 rna ? GO:0003735 ... Q02878 32601485
    9 6y6x:LF (2.8) BS01 rna ? GO:0000463 ... P18124 32601485
    10 6y6x:LF (2.8) BS02 rna ? GO:0000463 ... P18124 32601485
    11 6y6x:LG (2.8) BS01 rna ? GO:0000470 ... P62424 32601485
    12 6y6x:LG (2.8) BS02 rna ? GO:0000470 ... P62424 32601485
    13 6y6x:LH (2.8) BS01 rna ? GO:0002181 ... P32969 32601485
    14 6y6x:LI (2.8) BS01 rna ? GO:0000027 ... Q96L21 32601485
    15 6y6x:LI (2.8) BS02 rna ? GO:0000027 ... Q96L21 32601485
    16 6y6x:LJ (2.8) BS01 rna ? GO:0000027 ... P62913 32601485
    17 6y6x:LJ (2.8) BS02 rna ? GO:0000027 ... P62913 32601485
    18 6y6x:LL (2.8) BS01 rna ? GO:0001824 ... P26373 32601485
    19 6y6x:LL (2.8) BS02 rna ? GO:0001824 ... P26373 32601485
    20 6y6x:LM (2.8) BS01 rna ? GO:0003723 ... P50914 32601485
    21 6y6x:LN (2.8) BS01 rna ? GO:0002181 ... P61313 32601485
    22 6y6x:LN (2.8) BS02 rna ? GO:0002181 ... P61313 32601485
    23 6y6x:LO (2.8) BS01 rna ? GO:0002181 ... P40429 32601485
    24 6y6x:LP (2.8) BS01 rna ? GO:0003735 ... P18621 32601485
    25 6y6x:LP (2.8) BS02 rna ? GO:0003735 ... P18621 32601485
    26 6y6x:LQ (2.8) BS01 rna ? GO:0002181 ... Q07020 32601485
    27 6y6x:LR (2.8) BS01 rna ? GO:0002181 ... P84098 32601485
    28 6y6x:LS (2.8) BS01 rna ? GO:0002181 ... Q02543 32601485
    29 6y6x:LS (2.8) BS02 rna ? GO:0002181 ... Q02543 32601485
    30 6y6x:LT (2.8) BS01 rna ? GO:0002181 ... P46778 32601485
    31 6y6x:LT (2.8) BS02 rna ? GO:0002181 ... P46778 32601485
    32 6y6x:LU (2.8) BS01 rna ? GO:0003735 ... P35268 32601485
    33 6y6x:LV (2.8) BS01 rna ? GO:0000122 ... P62829 32601485
    34 6y6x:LW (2.8) BS01 rna ? N/A P83731 32601485
    35 6y6x:LX (2.8) BS01 rna ? GO:0003735 ... P62750 32601485
    36 6y6x:LX (2.8) BS02 rna ? GO:0003735 ... P62750 32601485
    37 6y6x:LY (2.8) BS01 rna ? GO:0002181 ... P61254 32601485
    38 6y6x:LY (2.8) BS02 rna ? GO:0002181 ... P61254 32601485
    39 6y6x:LZ (2.8) BS01 rna ? GO:0002181 ... P61353 32601485
    40 6y6x:La (2.8) BS01 rna ? GO:0002181 ... P46776 32601485
    41 6y6x:Lb (2.8) BS01 rna ? GO:0003735 ... P47914 32601485
    42 6y6x:Lc (2.8) BS01 rna ? GO:0003723 ... P62888 32601485
    43 6y6x:Ld (2.8) BS01 rna ? GO:0003735 ... P62899 32601485
    44 6y6x:Le (2.8) BS01 rna ? GO:0002181 ... P62910 32601485
    45 6y6x:Le (2.8) BS02 MG ? GO:0002181 ... P62910 32601485
    46 6y6x:Lf (2.8) BS01 rna ? GO:0000049 ... P18077 32601485
    47 6y6x:Lg (2.8) BS01 rna ? GO:0002181 ... P49207 32601485
    48 6y6x:Lg (2.8) BS02 MG ? GO:0002181 ... P49207 32601485
    49 6y6x:Lh (2.8) BS01 rna ? GO:0000463 ... P42766 32601485
    50 6y6x:Lh (2.8) BS02 rna ? GO:0000463 ... P42766 32601485
    51 6y6x:Li (2.8) BS01 rna ? GO:0002181 ... Q9Y3U8 32601485
    52 6y6x:Lj (2.8) BS01 rna ? GO:0003735 ... P61927 32601485
    53 6y6x:Lj (2.8) BS02 rna ? GO:0003735 ... P61927 32601485
    54 6y6x:Lj (2.8) BS03 ZN ? GO:0003735 ... P61927 32601485
    55 6y6x:Lk (2.8) BS01 rna ? GO:0001501 ... P63173 32601485
    56 6y6x:Ll (2.8) BS01 rna ? GO:0002181 ... P62891 32601485
    57 6y6x:Ll (2.8) BS02 rna ? GO:0002181 ... P62891 32601485
    58 6y6x:Lm (2.8) BS01 rna ? GO:0003735 ... P62987 32601485
    59 6y6x:Lm (2.8) BS02 ZN ? GO:0003735 ... P62987 32601485
    60 6y6x:Lo (2.8) BS01 rna ? GO:0002181 ... P83881 32601485
    61 6y6x:Lo (2.8) BS02 ZN ? GO:0002181 ... P83881 32601485
    62 6y6x:Lp (2.8) BS01 rna ? GO:0002181 ... P61513 32601485
    63 6y6x:Lp (2.8) BS02 ZN ? GO:0002181 ... P61513 32601485
    64 6y6x:Lr (2.8) BS01 rna ? GO:0002181 ... P46779 32601485
    65 6y6x:Lz (2.8) BS01 rna ? GO:0002181 ... P62906 32601485
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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