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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6y0g:LA (3.2) BS01 rna ? GO:0002181 ... P62917 32268098
    2 6y0g:LB (3.2) BS01 rna ? GO:0002181 ... P39023 32268098
    3 6y0g:LC (3.2) BS01 rna ? GO:0002181 ... P36578 32268098
    4 6y0g:LC (3.2) BS02 rna ? GO:0002181 ... P36578 32268098
    5 6y0g:LD (3.2) BS01 rna ? GO:0000027 ... P46777 32268098
    6 6y0g:LD (3.2) BS02 rna ? GO:0000027 ... P46777 32268098
    7 6y0g:LE (3.2) BS01 rna ? GO:0000027 ... Q02878 32268098
    8 6y0g:LF (3.2) BS01 rna ? GO:0000463 ... P18124 32268098
    9 6y0g:LF (3.2) BS02 rna ? GO:0000463 ... P18124 32268098
    10 6y0g:LG (3.2) BS01 rna ? GO:0000470 ... P62424 32268098
    11 6y0g:LG (3.2) BS02 rna ? GO:0000470 ... P62424 32268098
    12 6y0g:LH (3.2) BS01 rna ? GO:0002181 ... P32969 32268098
    13 6y0g:LI (3.2) BS01 rna ? GO:0000027 ... Q96L21 32268098
    14 6y0g:LI (3.2) BS02 rna ? GO:0000027 ... Q96L21 32268098
    15 6y0g:LI (3.2) BS03 rna ? GO:0000027 ... Q96L21 32268098
    16 6y0g:LJ (3.2) BS01 rna ? GO:0000027 ... P62913 32268098
    17 6y0g:LJ (3.2) BS02 rna ? GO:0000027 ... P62913 32268098
    18 6y0g:LJ (3.2) BS03 rna ? GO:0000027 ... P62913 32268098
    19 6y0g:LL (3.2) BS01 rna ? GO:0001824 ... P26373 32268098
    20 6y0g:LL (3.2) BS02 rna ? GO:0001824 ... P26373 32268098
    21 6y0g:LM (3.2) BS01 rna ? GO:0002181 ... P50914 32268098
    22 6y0g:LN (3.2) BS01 rna ? GO:0002181 ... P61313 32268098
    23 6y0g:LN (3.2) BS02 rna ? GO:0002181 ... P61313 32268098
    24 6y0g:LO (3.2) BS01 rna ? GO:0002181 ... P40429 32268098
    25 6y0g:LP (3.2) BS01 rna ? GO:0002181 ... P18621 32268098
    26 6y0g:LP (3.2) BS02 rna ? GO:0002181 ... P18621 32268098
    27 6y0g:LQ (3.2) BS01 rna ? GO:0002181 ... Q07020 32268098
    28 6y0g:LR (3.2) BS01 rna ? GO:0002181 ... P84098 32268098
    29 6y0g:LR (3.2) BS02 rna ? GO:0002181 ... P84098 32268098
    30 6y0g:LS (3.2) BS01 rna ? GO:0002181 ... Q02543 32268098
    31 6y0g:LS (3.2) BS02 rna ? GO:0002181 ... Q02543 32268098
    32 6y0g:LT (3.2) BS01 rna ? GO:0002181 ... P46778 32268098
    33 6y0g:LT (3.2) BS02 rna ? GO:0002181 ... P46778 32268098
    34 6y0g:LU (3.2) BS01 rna ? GO:0002181 ... P35268 32268098
    35 6y0g:LV (3.2) BS01 rna ? GO:0000122 ... P62829 32268098
    36 6y0g:LV (3.2) BS02 rna ? GO:0000122 ... P62829 32268098
    37 6y0g:LW (3.2) BS01 rna ? GO:0000027 ... P83731 32268098
    38 6y0g:LW (3.2) BS02 rna ? GO:0000027 ... P83731 32268098
    39 6y0g:LX (3.2) BS01 rna ? GO:0000027 ... P62750 32268098
    40 6y0g:LX (3.2) BS02 rna ? GO:0000027 ... P62750 32268098
    41 6y0g:LY (3.2) BS01 rna ? GO:0002181 ... P61254 32268098
    42 6y0g:LY (3.2) BS02 rna ? GO:0002181 ... P61254 32268098
    43 6y0g:LZ (3.2) BS01 rna ? GO:0002181 ... P61353 32268098
    44 6y0g:La (3.2) BS01 rna ? GO:0002181 ... P46776 32268098
    45 6y0g:Lb (3.2) BS01 rna ? GO:0002181 ... P47914 32268098
    46 6y0g:Lc (3.2) BS01 rna ? GO:0002181 ... P62888 32268098
    47 6y0g:Ld (3.2) BS01 rna ? GO:0002181 ... P62899 32268098
    48 6y0g:Le (3.2) BS01 rna ? GO:0002181 ... P62910 32268098
    49 6y0g:Lf (3.2) BS01 rna ? GO:0000049 ... P18077 32268098
    50 6y0g:Lg (3.2) BS01 rna ? GO:0002181 ... P49207 32268098
    51 6y0g:Lg (3.2) BS02 ZN ? GO:0002181 ... P49207 32268098
    52 6y0g:Lh (3.2) BS01 rna ? GO:0000463 ... P42766 32268098
    53 6y0g:Lh (3.2) BS02 rna ? GO:0000463 ... P42766 32268098
    54 6y0g:Li (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 32268098
    55 6y0g:Lj (3.2) BS01 rna ? GO:0002181 ... P61927 32268098
    56 6y0g:Lj (3.2) BS02 rna ? GO:0002181 ... P61927 32268098
    57 6y0g:Lj (3.2) BS03 ZN ? GO:0002181 ... P61927 32268098
    58 6y0g:Lk (3.2) BS01 rna ? GO:0001501 ... P63173 32268098
    59 6y0g:Ll (3.2) BS01 rna ? GO:0002181 ... P62891 32268098
    60 6y0g:Ll (3.2) BS02 rna ? GO:0002181 ... P62891 32268098
    61 6y0g:Lm (3.2) BS01 rna ? GO:0002181 ... P62987 32268098
    62 6y0g:Lm (3.2) BS02 ZN ? GO:0002181 ... P62987 32268098
    63 6y0g:Lo (3.2) BS01 rna ? GO:0002181 ... P83881 32268098
    64 6y0g:Lo (3.2) BS02 rna ? GO:0002181 ... P83881 32268098
    65 6y0g:Lo (3.2) BS03 ZN ? GO:0002181 ... P83881 32268098
    66 6y0g:Lp (3.2) BS01 rna ? GO:0002181 ... P61513 32268098
    67 6y0g:Lp (3.2) BS02 ZN ? GO:0002181 ... P61513 32268098
    68 6y0g:Lr (3.2) BS01 rna ? GO:0002181 ... P46779 32268098
    69 6y0g:SA (3.2) BS01 rna ? GO:0000028 ... P08865 32268098
    70 6y0g:SB (3.2) BS01 rna ? GO:0002181 ... P61247 32268098
    71 6y0g:SC (3.2) BS01 rna ? GO:0002181 ... P15880 32268098
    72 6y0g:SC (3.2) BS02 rna ? GO:0002181 ... P15880 32268098
    73 6y0g:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 32268098
    74 6y0g:SD (3.2) BS02 rna 4.2.99.18 GO:0000977 ... P23396 32268098
    75 6y0g:SE (3.2) BS01 rna ? GO:0002181 ... P62701 32268098
    76 6y0g:SF (3.2) BS01 rna ? GO:0000028 ... P46782 32268098
    77 6y0g:SG (3.2) BS01 rna ? GO:0000082 ... P62753 32268098
    78 6y0g:SH (3.2) BS01 rna ? GO:0001843 ... P62081 32268098
    79 6y0g:SI (3.2) BS01 rna ? GO:0000462 ... P62241 32268098
    80 6y0g:SI (3.2) BS02 rna ? GO:0000462 ... P62241 32268098
    81 6y0g:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 32268098
    82 6y0g:SK (3.2) BS01 rna ? GO:0002181 ... P46783 32268098
    83 6y0g:SL (3.2) BS01 rna ? GO:0002181 ... P62280 32268098
    84 6y0g:SM (3.2) BS01 rna ? GO:0002181 ... P25398 32268098
    85 6y0g:SN (3.2) BS01 rna ? GO:0002181 ... P62277 32268098
    86 6y0g:SN (3.2) BS02 rna ? GO:0002181 ... P62277 32268098
    87 6y0g:SO (3.2) BS01 rna ? GO:0000028 ... P62263 32268098
    88 6y0g:SP (3.2) BS01 rna ? GO:0000028 ... P62841 32268098
    89 6y0g:SP (3.2) BS02 rna ? GO:0000028 ... P62841 32268098
    90 6y0g:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 32268098
    91 6y0g:SR (3.2) BS01 rna ? GO:0002181 ... P08708 32268098
    92 6y0g:SS (3.2) BS01 rna ? GO:0002181 ... P62269 32268098
    93 6y0g:SS (3.2) BS02 rna ? GO:0002181 ... P62269 32268098
    94 6y0g:SS (3.2) BS03 rna ? GO:0002181 ... P62269 32268098
    95 6y0g:ST (3.2) BS01 rna ? GO:0000028 ... P39019 32268098
    96 6y0g:SU (3.2) BS01 rna ? GO:0002181 ... P60866 32268098
    97 6y0g:SW (3.2) BS01 rna ? GO:0002181 ... P62244 32268098
    98 6y0g:SX (3.2) BS01 rna ? GO:0002181 ... P62266 32268098
    99 6y0g:SY (3.2) BS01 rna ? GO:0002181 ... P62847 32268098
    100 6y0g:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 32268098
    101 6y0g:SZ (3.2) BS02 rna ? GO:0002181 ... P62851 32268098
    102 6y0g:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 32268098
    103 6y0g:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 32268098
    104 6y0g:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 32268098
    105 6y0g:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 32268098
    106 6y0g:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 32268098
    107 6y0g:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 32268098
    108 6y0g:Se (3.2) BS01 rna ? GO:0003735 ... P62861 32268098
    109 6y0g:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 32268098
    110 6y0g:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 32268098
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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