Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6x6t:0 (3.2) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6x6t:1 (3.2) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6x6t:2 (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6x6t:3 (3.2) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6x6t:4 (3.2) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6x6t:9 (3.2) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    7 6x6t:AA (3.2) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6x6t:AA (3.2) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6x6t:AA (3.2) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    10 6x6t:AB (3.2) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    11 6x6t:AB (3.2) BS02 rna ? GO:0005515 ... P0AFG0 32820061
    12 6x6t:AE (3.2) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6x6t:AE (3.2) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6x6t:AE (3.2) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6x6t:AE (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6x6t:AE (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    17 6x6t:AE (3.2) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    18 6x6t:C (3.2) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    19 6x6t:E (3.2) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    20 6x6t:F (3.2) BS01 rna ? GO:0000028 ... P68679 32820061
    21 6x6t:G (3.2) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    22 6x6t:I (3.2) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    23 6x6t:I (3.2) BS02 rna ? GO:0000028 ... P0A7V3 32820061
    24 6x6t:J (3.2) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    25 6x6t:K (3.2) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    26 6x6t:K (3.2) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    27 6x6t:L (3.2) BS01 rna ? GO:0002181 ... P02358 32820061
    28 6x6t:M (3.2) BS01 rna ? GO:0000028 ... P02359 32820061
    29 6x6t:M (3.2) BS02 rna ? GO:0000028 ... P02359 32820061
    30 6x6t:N (3.2) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    31 6x6t:O (3.2) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    32 6x6t:P (3.2) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    33 6x6t:Q (3.2) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    34 6x6t:R (3.2) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    35 6x6t:S (3.2) BS01 rna ? GO:0000028 ... P0AG59 32820061
    36 6x6t:T (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    37 6x6t:T (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    38 6x6t:U (3.2) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    39 6x6t:V (3.2) BS01 rna ? GO:0000028 ... P0AG63 32820061
    40 6x6t:W (3.2) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    41 6x6t:X (3.2) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    42 6x6t:X (3.2) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    43 6x6t:b (3.2) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    44 6x6t:b (3.2) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    45 6x6t:c (3.2) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    46 6x6t:e (3.2) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    47 6x6t:f (3.2) BS01 rna ? GO:0000027 ... P0AG51 32820061
    48 6x6t:f (3.2) BS02 rna ? GO:0000027 ... P0AG51 32820061
    49 6x6t:g (3.2) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    50 6x6t:h (3.2) BS01 rna ? GO:0000027 ... P60422 32820061
    51 6x6t:i (3.2) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    52 6x6t:j (3.2) BS01 rna ? GO:0000027 ... P60438 32820061
    53 6x6t:k (3.2) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    54 6x6t:l (3.2) BS01 rna ? GO:0001070 ... P60723 32820061
    55 6x6t:m (3.2) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    56 6x6t:n (3.2) BS01 rna ? GO:0000027 ... P62399 32820061
    57 6x6t:n (3.2) BS02 rna ? GO:0000027 ... P62399 32820061
    58 6x6t:o (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    59 6x6t:p (3.2) BS01 rna ? GO:0000027 ... P0AG55 32820061
    60 6x6t:q (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    61 6x6t:r (3.2) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    62 6x6t:s (3.2) BS01 rna ? GO:0002181 ... P0AA10 32820061
    63 6x6t:t (3.2) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    64 6x6t:t (3.2) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    65 6x6t:u (3.2) BS01 rna ? GO:0002181 ... P02413 32820061
    66 6x6t:v (3.2) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    67 6x6t:v (3.2) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    68 6x6t:w (3.2) BS01 rna ? GO:0000027 ... P0AG44 32820061
    69 6x6t:x (3.2) BS01 rna ? GO:0002181 ... P0C018 32820061
    70 6x6t:x (3.2) BS02 rna ? GO:0002181 ... P0C018 32820061
    71 6x6t:y (3.2) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    72 6x6t:z (3.2) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218