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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wqn:A (2.9) BS01 rna ? GO:0003735 ... Q2FZ42 32566908
    2 6wqn:B (2.9) BS01 rna ? GO:0002181 ... P60430 32566908
    3 6wqn:C (2.9) BS01 rna ? GO:0000027 ... Q2FXQ1 32566908
    4 6wqn:D (2.9) BS01 rna ? GO:0003723 ... Q2FXS8 32566908
    5 6wqn:E (2.9) BS01 rna ? GO:0003735 ... Q2FW11 32566908
    6 6wqn:F (2.9) BS01 rna ? GO:0000027 ... Q2FW08 32566908
    7 6wqn:G (2.9) BS01 rna ? GO:0003723 ... Q2FW17 32566908
    8 6wqn:H (2.9) BS01 rna ? GO:0003735 ... Q2G0S0 32566908
    9 6wqn:I (2.9) BS01 rna ? GO:0003735 ... Q2FXT0 32566908
    10 6wqn:I (2.9) BS02 rna ? GO:0003735 ... Q2FXT0 32566908
    11 6wqn:J (2.9) BS01 rna ? GO:0003735 ... Q2FZ60 32566908
    12 6wqn:K (2.9) BS01 rna ? GO:0003735 ... Q2FW14 32566908
    13 6wqn:L (2.9) BS01 rna ? GO:0003735 ... Q2FW06 32566908
    14 6wqn:M (2.9) BS01 rna ? GO:0003735 ... P0A0G2 32566908
    15 6wqn:N (2.9) BS01 rna ? GO:0003735 ... Q2FZF1 32566908
    16 6wqn:O (2.9) BS01 rna ? GO:0003735 ... Q2FY22 32566908
    17 6wqn:P (2.9) BS01 rna ? GO:0003735 ... Q2FUQ0 32566908
    18 6wqn:Q (2.9) BS01 rna ? GO:0003735 ... Q2FXQ0 32566908
    19 6wqn:R (2.9) BS01 rna ? GO:0003735 ... Q2FW29 32566908
    20 6wqn:S (2.9) BS01 rna ? GO:0003735 ... Q2FW07 32566908
    21 6wqn:V (2.9) BS01 rna ? GO:0003729 ... Q2FW38 32566908
    22 6wqn:W (2.9) BS01 rna ? GO:0003735 ... Q2FW16 32566908
    23 6wqn:X (2.9) BS01 rna ? GO:0003735 ... P0A0F8 32566908
    24 6wqn:Y (2.9) BS01 rna ? GO:0000049 ... Q2FW13 32566908
    25 6wqn:Z (2.9) BS01 rna ? GO:0003735 ... Q2FW33 32566908
    26 6wqn:a (2.9) BS01 rna ? GO:0003735 ... Q2FW22 32566908
    27 6wqn:a (2.9) BS02 rna ? GO:0003735 ... Q2FW22 32566908
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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