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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wq2:A (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    2 6wq2:A (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    3 6wq2:B (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    4 6wq2:B (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    5 6wq2:C (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    6 6wq2:C (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    7 6wq2:D (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    8 6wq2:D (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    9 6wq2:E (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    10 6wq2:E (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    11 6wq2:F (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    12 6wq2:F (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    13 6wq2:G (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    14 6wq2:G (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    15 6wq2:H (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    16 6wq2:H (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    17 6wq2:I (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    18 6wq2:I (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    19 6wq2:J (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    20 6wq2:J (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    21 6wq2:K (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    22 6wq2:K (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    23 6wq2:L (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    24 6wq2:L (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    25 6wq2:M (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    26 6wq2:M (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    27 6wq2:N (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    28 6wq2:N (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    29 6wq2:P (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    30 6wq2:P (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    31 6wq2:R (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    32 6wq2:R (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    33 6wq2:T (4.0) BS01 dna ? GO:0003677 ... Q914J5 32759221
    34 6wq2:T (4.0) BS02 dna ? GO:0003677 ... Q914J5 32759221
    35 6wq2:a (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    36 6wq2:a (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    37 6wq2:b (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    38 6wq2:b (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    39 6wq2:c (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    40 6wq2:c (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    41 6wq2:d (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    42 6wq2:d (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    43 6wq2:e (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    44 6wq2:e (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    45 6wq2:f (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    46 6wq2:f (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    47 6wq2:g (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    48 6wq2:g (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    49 6wq2:h (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    50 6wq2:h (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    51 6wq2:i (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    52 6wq2:i (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    53 6wq2:j (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    54 6wq2:j (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    55 6wq2:k (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    56 6wq2:k (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    57 6wq2:l (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    58 6wq2:l (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    59 6wq2:m (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    60 6wq2:m (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    61 6wq2:n (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    62 6wq2:n (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    63 6wq2:p (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    64 6wq2:p (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    65 6wq2:r (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    66 6wq2:r (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    67 6wq2:t (4.0) BS01 dna ? GO:0003677 ... Q914J4 32759221
    68 6wq2:t (4.0) BS02 dna ? GO:0003677 ... Q914J4 32759221
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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