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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wnw:A (3.2) BS01 rna ? GO:0002181 ... P0A7M9 32518240
    2 6wnw:B (3.2) BS01 rna ? GO:0000027 ... P0A7N4 32518240
    3 6wnw:C (3.2) BS01 rna ? GO:0000027 ... P0A7N9 32518240
    4 6wnw:D (3.2) BS01 rna ? GO:0002181 ... P0A7P5 32518240
    5 6wnw:E (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 32518240
    6 6wnw:F (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 32518240
    7 6wnw:G (3.2) BS01 rna ? GO:0000028 ... P0A7V0 32518240
    8 6wnw:H (3.2) BS01 rna ? GO:0003676 ... P0A7V3 32518240
    9 6wnw:I (3.2) BS01 rna ? GO:0000028 ... P0A7V8 32518240
    10 6wnw:J (3.2) BS01 rna ? GO:0000028 ... P0A7W1 32518240
    11 6wnw:K (3.2) BS01 rna ? GO:0003735 ... P02358 32518240
    12 6wnw:L (3.2) BS01 rna ? GO:0003723 ... P02359 32518240
    13 6wnw:M (3.2) BS01 rna ? GO:0000028 ... P0A7W7 32518240
    14 6wnw:N (3.2) BS01 rna ? GO:0000049 ... P0A7X3 32518240
    15 6wnw:N (3.2) BS02 rna ? GO:0000049 ... P0A7X3 32518240
    16 6wnw:O (3.2) BS01 rna ? GO:0000049 ... P0A7R5 32518240
    17 6wnw:P (3.2) BS01 rna ? GO:0002181 ... P0A7R9 32518240
    18 6wnw:Q (3.2) BS01 rna ? GO:0000049 ... P0A7S3 32518240
    19 6wnw:R (3.2) BS01 rna ? GO:0000049 ... P0A7S9 32518240
    20 6wnw:S (3.2) BS01 rna ? GO:0000028 ... P0AG59 32518240
    21 6wnw:T (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 32518240
    22 6wnw:T (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 32518240
    23 6wnw:U (3.2) BS01 rna ? GO:0000028 ... P0A7T3 32518240
    24 6wnw:V (3.2) BS01 rna ? GO:0000028 ... P0AG63 32518240
    25 6wnw:W (3.2) BS01 rna ? GO:0003735 ... P0A7T7 32518240
    26 6wnw:X (3.2) BS01 rna ? GO:0003723 ... P0A7U3 32518240
    27 6wnw:Y (3.2) BS01 rna ? GO:0000028 ... P0A7U7 32518240
    28 6wnw:Z (3.2) BS01 rna ? GO:0000028 ... P68679 32518240
    29 6wnw:a (3.2) BS01 rna ? GO:0000027 ... P0A7L0 32518240
    30 6wnw:b (3.2) BS01 rna ? GO:0000027 ... P60422 32518240
    31 6wnw:b (3.2) BS02 rna ? GO:0000027 ... P60422 32518240
    32 6wnw:c (3.2) BS01 rna ? GO:0000027 ... P60438 32518240
    33 6wnw:d (3.2) BS01 rna ? GO:0001070 ... P60723 32518240
    34 6wnw:e (3.2) BS01 rna ? GO:0000027 ... P62399 32518240
    35 6wnw:e (3.2) BS02 rna ? GO:0000027 ... P62399 32518240
    36 6wnw:f (3.2) BS01 rna ? GO:0000027 ... P0AG55 32518240
    37 6wnw:g (3.2) BS01 rna ? GO:0002181 ... P0A7R1 32518240
    38 6wnw:h (3.2) BS01 rna ? GO:0003735 ... P0A7J3 32518240
    39 6wnw:i (3.2) BS01 rna ? GO:0000027 ... P0A7J7 32518240
    40 6wnw:j (3.2) BS01 rna ? GO:0002181 ... P0AA10 32518240
    41 6wnw:k (3.2) BS01 rna ? GO:0002181 ... P0ADY3 32518240
    42 6wnw:k (3.2) BS02 rna ? GO:0002181 ... P0ADY3 32518240
    43 6wnw:l (3.2) BS01 rna ? GO:0002181 ... P02413 32518240
    44 6wnw:m (3.2) BS01 rna ? GO:0000027 ... P0ADY7 32518240
    45 6wnw:n (3.2) BS01 rna ? GO:0000027 ... P0AG44 32518240
    46 6wnw:o (3.2) BS01 rna ? GO:0002181 ... P0C018 32518240
    47 6wnw:p (3.2) BS01 rna ? GO:0000027 ... P0A7K6 32518240
    48 6wnw:p (3.2) BS02 rna ? GO:0000027 ... P0A7K6 32518240
    49 6wnw:q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 32518240
    50 6wnw:r (3.2) BS01 rna ? GO:0002181 ... P0AG48 32518240
    51 6wnw:s (3.2) BS01 rna ? GO:0002181 ... P61175 32518240
    52 6wnw:t (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 32518240
    53 6wnw:u (3.2) BS01 rna ? GO:0000027 ... P60624 32518240
    54 6wnw:v (3.2) BS01 rna ? GO:0000027 ... P68919 32518240
    55 6wnw:w (3.2) BS01 rna ? GO:0003735 ... P0A7L8 32518240
    56 6wnw:x (3.2) BS01 rna ? GO:0000027 ... P0A7M2 32518240
    57 6wnw:y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 32518240
    58 6wnw:z (3.2) BS01 rna ? GO:0000027 ... P0AG51 32518240
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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