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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wdk:B (3.6) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    2 6wdk:C (3.6) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    3 6wdk:D (3.6) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    4 6wdk:E (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    5 6wdk:F (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    6 6wdk:G (3.6) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    7 6wdk:H (3.6) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    8 6wdk:I (3.6) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    9 6wdk:J (3.6) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    10 6wdk:K (3.6) BS01 rna ? GO:0003735 ... P02358 32612237
    11 6wdk:L (3.6) BS01 rna ? GO:0003723 ... P02359 32612237
    12 6wdk:L (3.6) BS02 rna ? GO:0003723 ... P02359 32612237
    13 6wdk:M (3.6) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    14 6wdk:N (3.6) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    15 6wdk:O (3.6) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    16 6wdk:P (3.6) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    17 6wdk:Q (3.6) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    18 6wdk:R (3.6) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    19 6wdk:R (3.6) BS02 rna ? GO:0000049 ... P0A7S9 32612237
    20 6wdk:S (3.6) BS01 rna ? GO:0000028 ... P0AG59 32612237
    21 6wdk:T (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    22 6wdk:T (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    23 6wdk:U (3.6) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    24 6wdk:V (3.6) BS01 rna ? GO:0000028 ... P0AG63 32612237
    25 6wdk:W (3.6) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    26 6wdk:X (3.6) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    27 6wdk:Y (3.6) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    28 6wdk:Z (3.6) BS01 rna ? GO:0000028 ... P68679 32612237
    29 6wdk:Z (3.6) BS02 rna ? GO:0000028 ... P68679 32612237
    30 6wdk:a (3.6) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    31 6wdk:a (3.6) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    32 6wdk:b (3.6) BS01 rna ? GO:0000027 ... P60422 32612237
    33 6wdk:b (3.6) BS02 rna ? GO:0000027 ... P60422 32612237
    34 6wdk:c (3.6) BS01 rna ? GO:0000027 ... P60438 32612237
    35 6wdk:d (3.6) BS01 rna ? GO:0001070 ... P60723 32612237
    36 6wdk:e (3.6) BS01 rna ? GO:0000027 ... P62399 32612237
    37 6wdk:e (3.6) BS02 rna ? GO:0000027 ... P62399 32612237
    38 6wdk:e (3.6) BS03 rna ? GO:0000027 ... P62399 32612237
    39 6wdk:f (3.6) BS01 rna ? GO:0000027 ... P0AG55 32612237
    40 6wdk:g (3.6) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    41 6wdk:h (3.6) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    42 6wdk:i (3.6) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    43 6wdk:j (3.6) BS01 rna ? GO:0002181 ... P0AA10 32612237
    44 6wdk:k (3.6) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    45 6wdk:k (3.6) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    46 6wdk:l (3.6) BS01 rna ? GO:0002181 ... P02413 32612237
    47 6wdk:m (3.6) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    48 6wdk:m (3.6) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    49 6wdk:n (3.6) BS01 rna ? GO:0000027 ... P0AG44 32612237
    50 6wdk:o (3.6) BS01 rna ? GO:0002181 ... P0C018 32612237
    51 6wdk:o (3.6) BS02 rna ? GO:0002181 ... P0C018 32612237
    52 6wdk:p (3.6) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    53 6wdk:p (3.6) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    54 6wdk:q (3.6) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    55 6wdk:r (3.6) BS01 rna ? GO:0002181 ... P0AG48 32612237
    56 6wdk:s (3.6) BS01 rna ? GO:0002181 ... P61175 32612237
    57 6wdk:t (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    58 6wdk:u (3.6) BS01 rna ? GO:0000027 ... P60624 32612237
    59 6wdk:v (3.6) BS01 rna ? GO:0000027 ... P68919 32612237
    60 6wdk:w (3.6) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    61 6wdk:w (3.6) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    62 6wdk:x (3.6) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    63 6wdk:y (3.6) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    64 6wdk:z (3.6) BS01 rna ? GO:0000027 ... P0AG51 32612237
    65 6wdk:z (3.6) BS02 rna ? GO:0000027 ... P0AG51 32612237
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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