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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vz2:0 (10.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6vz2:1 (10.0) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6vz2:2 (10.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6vz2:3 (10.0) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6vz2:4 (10.0) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6vz2:AA (10.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    7 6vz2:AA (10.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6vz2:AA (10.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6vz2:AB (10.0) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    10 6vz2:AE (10.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    11 6vz2:AE (10.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6vz2:AE (10.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6vz2:AE (10.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6vz2:AE (10.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6vz2:AE (10.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6vz2:C (10.0) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    17 6vz2:E (10.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    18 6vz2:F (10.0) BS01 rna ? GO:0000028 ... P68679 32820061
    19 6vz2:G (10.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    20 6vz2:I (10.0) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    21 6vz2:J (10.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    22 6vz2:K (10.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    23 6vz2:L (10.0) BS01 rna ? GO:0002181 ... P02358 32820061
    24 6vz2:M (10.0) BS01 rna ? GO:0000028 ... P02359 32820061
    25 6vz2:M (10.0) BS02 rna ? GO:0000028 ... P02359 32820061
    26 6vz2:N (10.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    27 6vz2:O (10.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    28 6vz2:P (10.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    29 6vz2:Q (10.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    30 6vz2:R (10.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    31 6vz2:S (10.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    32 6vz2:T (10.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    33 6vz2:T (10.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    34 6vz2:U (10.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    35 6vz2:V (10.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    36 6vz2:W (10.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    37 6vz2:X (10.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    38 6vz2:X (10.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    39 6vz2:b (10.0) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    40 6vz2:b (10.0) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    41 6vz2:c (10.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    42 6vz2:e (10.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    43 6vz2:f (10.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    44 6vz2:f (10.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    45 6vz2:g (10.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    46 6vz2:h (10.0) BS01 rna ? GO:0000027 ... P60422 32820061
    47 6vz2:i (10.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    48 6vz2:j (10.0) BS01 rna ? GO:0000027 ... P60438 32820061
    49 6vz2:k (10.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    50 6vz2:l (10.0) BS01 rna ? GO:0001070 ... P60723 32820061
    51 6vz2:m (10.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    52 6vz2:n (10.0) BS01 rna ? GO:0000027 ... P62399 32820061
    53 6vz2:n (10.0) BS02 rna ? GO:0000027 ... P62399 32820061
    54 6vz2:o (10.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    55 6vz2:p (10.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    56 6vz2:q (10.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    57 6vz2:r (10.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    58 6vz2:s (10.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    59 6vz2:t (10.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    60 6vz2:t (10.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    61 6vz2:u (10.0) BS01 rna ? GO:0002181 ... P02413 32820061
    62 6vz2:v (10.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    63 6vz2:v (10.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    64 6vz2:w (10.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    65 6vz2:x (10.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    66 6vz2:x (10.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    67 6vz2:y (10.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    68 6vz2:z (10.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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