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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vyu:0 (7.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6vyu:1 (7.0) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6vyu:2 (7.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6vyu:3 (7.0) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6vyu:4 (7.0) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6vyu:AA (7.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    7 6vyu:AA (7.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6vyu:AA (7.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6vyu:AB (7.0) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    10 6vyu:AE (7.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    11 6vyu:AE (7.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6vyu:AE (7.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6vyu:AE (7.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6vyu:AE (7.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6vyu:AE (7.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6vyu:C (7.0) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    17 6vyu:E (7.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    18 6vyu:F (7.0) BS01 rna ? GO:0000028 ... P68679 32820061
    19 6vyu:G (7.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    20 6vyu:I (7.0) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    21 6vyu:J (7.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    22 6vyu:K (7.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    23 6vyu:L (7.0) BS01 rna ? GO:0002181 ... P02358 32820061
    24 6vyu:M (7.0) BS01 rna ? GO:0000028 ... P02359 32820061
    25 6vyu:M (7.0) BS02 rna ? GO:0000028 ... P02359 32820061
    26 6vyu:N (7.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    27 6vyu:O (7.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    28 6vyu:P (7.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    29 6vyu:Q (7.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    30 6vyu:R (7.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    31 6vyu:S (7.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    32 6vyu:T (7.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    33 6vyu:T (7.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    34 6vyu:U (7.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    35 6vyu:V (7.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    36 6vyu:W (7.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    37 6vyu:X (7.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    38 6vyu:X (7.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    39 6vyu:b (7.0) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    40 6vyu:b (7.0) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    41 6vyu:c (7.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    42 6vyu:e (7.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    43 6vyu:f (7.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    44 6vyu:f (7.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    45 6vyu:g (7.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    46 6vyu:h (7.0) BS01 rna ? GO:0000027 ... P60422 32820061
    47 6vyu:i (7.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    48 6vyu:j (7.0) BS01 rna ? GO:0000027 ... P60438 32820061
    49 6vyu:k (7.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    50 6vyu:l (7.0) BS01 rna ? GO:0001070 ... P60723 32820061
    51 6vyu:m (7.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    52 6vyu:n (7.0) BS01 rna ? GO:0000027 ... P62399 32820061
    53 6vyu:n (7.0) BS02 rna ? GO:0000027 ... P62399 32820061
    54 6vyu:o (7.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    55 6vyu:p (7.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    56 6vyu:q (7.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    57 6vyu:r (7.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    58 6vyu:s (7.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    59 6vyu:t (7.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    60 6vyu:t (7.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    61 6vyu:u (7.0) BS01 rna ? GO:0002181 ... P02413 32820061
    62 6vyu:v (7.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    63 6vyu:v (7.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    64 6vyu:w (7.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    65 6vyu:x (7.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    66 6vyu:x (7.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    67 6vyu:y (7.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    68 6vyu:z (7.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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