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BioLiP
Download all results in tab-seperated text for 32 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vst:A (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    2 6vst:A (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    3 6vst:A (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    4 6vst:B (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    5 6vst:B (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    6 6vst:B (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    7 6vst:C (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    8 6vst:C (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    9 6vst:D (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    10 6vst:D (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    11 6vst:E (2.12) BS01 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    12 6vst:E (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    13 6vst:E (2.12) BS03 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    14 6vst:F (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    15 6vst:F (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    16 6vst:F (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    17 6vst:G (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    18 6vst:G (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    19 6vst:H (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    20 6vst:H (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    21 6vst:H (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    22 6vst:I (2.12) BS01 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    23 6vst:I (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    24 6vst:I (2.12) BS03 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    25 6vst:J (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    26 6vst:J (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    27 6vst:J (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    28 6vst:K (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    29 6vst:K (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    30 6vst:L (2.12) BS01 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    31 6vst:L (2.12) BS02 MN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    32 6vst:L (2.12) BS03 ORN 3.5.3.1
    3.5.3.11    		 GO:0000050 ... G7JFU5 32754173
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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