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BioLiP
Download all results in tab-seperated text for 92 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6v7b:A (3.4) BS01 dna ? GO:0003677 ... A0A6M3VZT9 32368353
    2 6v7b:A (3.4) BS02 dna ? GO:0003677 ... A0A6M3VZT9 32368353
    3 6v7b:B (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    4 6v7b:B (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    5 6v7b:C (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    6 6v7b:C (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    7 6v7b:D (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    8 6v7b:D (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    9 6v7b:E (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    10 6v7b:E (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    11 6v7b:F (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    12 6v7b:F (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    13 6v7b:G (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    14 6v7b:G (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    15 6v7b:H (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    16 6v7b:H (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    17 6v7b:I (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    18 6v7b:I (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    19 6v7b:J (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    20 6v7b:J (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    21 6v7b:K (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    22 6v7b:K (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    23 6v7b:L (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    24 6v7b:L (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    25 6v7b:M (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    26 6v7b:M (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    27 6v7b:N (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    28 6v7b:N (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    29 6v7b:O (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    30 6v7b:O (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    31 6v7b:P (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    32 6v7b:P (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    33 6v7b:Q (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    34 6v7b:Q (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    35 6v7b:R (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    36 6v7b:R (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    37 6v7b:S (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    38 6v7b:S (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    39 6v7b:T (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    40 6v7b:T (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    41 6v7b:U (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    42 6v7b:U (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    43 6v7b:V (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    44 6v7b:V (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    45 6v7b:W (3.4) BS01 dna ? GO:0003677 ... A0A140F3K6 32368353
    46 6v7b:W (3.4) BS02 dna ? GO:0003677 ... A0A140F3K6 32368353
    47 6v7b:a (3.4) BS01 dna ? GO:0003677 ... A0A6M3VWZ7 32368353
    48 6v7b:a (3.4) BS02 dna ? GO:0003677 ... A0A6M3VWZ7 32368353
    49 6v7b:b (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    50 6v7b:b (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    51 6v7b:c (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    52 6v7b:c (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    53 6v7b:d (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    54 6v7b:d (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    55 6v7b:e (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    56 6v7b:e (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    57 6v7b:f (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    58 6v7b:f (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    59 6v7b:g (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    60 6v7b:g (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    61 6v7b:h (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    62 6v7b:h (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    63 6v7b:i (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    64 6v7b:i (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    65 6v7b:j (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    66 6v7b:j (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    67 6v7b:k (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    68 6v7b:k (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    69 6v7b:l (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    70 6v7b:l (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    71 6v7b:m (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    72 6v7b:m (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    73 6v7b:n (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    74 6v7b:n (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    75 6v7b:o (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    76 6v7b:o (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    77 6v7b:p (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    78 6v7b:p (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    79 6v7b:q (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    80 6v7b:q (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    81 6v7b:r (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    82 6v7b:r (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    83 6v7b:s (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    84 6v7b:s (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    85 6v7b:t (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    86 6v7b:t (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    87 6v7b:u (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    88 6v7b:u (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    89 6v7b:v (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    90 6v7b:v (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    91 6v7b:w (3.4) BS01 dna ? GO:0003677 ... A0A140F3K7 32368353
    92 6v7b:w (3.4) BS02 dna ? GO:0003677 ... A0A140F3K7 32368353
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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