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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6v4x:A (3.2) BS01 rna ? GO:0000243 ... P62318 32029631
    2 6v4x:B (3.2) BS01 rna ? GO:0003723 ... P14678 32029631
    3 6v4x:C (3.2) BS01 rna ? GO:0003723 ... Q969L4 32029631
    4 6v4x:C (3.2) BS02 rna ? GO:0003723 ... Q969L4 32029631
    5 6v4x:D (3.2) BS01 rna ? GO:0003723 ... P83369 32029631
    6 6v4x:D (3.2) BS02 rna ? GO:0003723 ... P83369 32029631
    7 6v4x:E (3.2) BS01 rna ? GO:0000245 ... P62304 32029631
    8 6v4x:F (3.2) BS01 rna ? GO:0000387 ... P62306 32029631
    9 6v4x:G (3.2) BS01 rna ? GO:0000245 ... P62308 32029631
    10 6v4x:H (3.2) BS01 rna 3.1.27.- GO:0003723 ... Q9UKF6 32029631
    11 6v4x:H (3.2) BS02 ZN 3.1.27.- GO:0003723 ... Q9UKF6 32029631
    12 6v4x:H (3.2) BS03 ZN 3.1.27.- GO:0003723 ... Q9UKF6 32029631
    13 6v4x:I (3.2) BS01 rna ? GO:0003723 ... Q9P2I0 32029631
    14 6v4x:I (3.2) BS02 rna ? GO:0003723 ... Q9P2I0 32029631
    15 6v4x:J (3.2) BS01 rna ? N/A Q92797 32029631
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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