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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6v39:0 (3.04) BS01 rna ? GO:0003735 ... N/A 31964740
    2 6v39:1 (3.04) BS01 rna ? GO:0003735 ... N9DYI8 31964740
    3 6v39:2 (3.04) BS01 rna ? GO:0003735 ... B7I693 31964740
    4 6v39:3 (3.04) BS01 rna ? GO:0003735 ... A0A1Y3CHB1 31964740
    5 6v39:3 (3.04) BS02 ZN ? GO:0003735 ... A0A1Y3CHB1 31964740
    6 6v39:C (3.04) BS01 rna ? GO:0002181 ... B7IA36 31964740
    7 6v39:D (3.04) BS01 rna ? GO:0003735 ... B7IA39 31964740
    8 6v39:E (3.04) BS01 rna ? GO:0003735 ... B7IA38 31964740
    9 6v39:F (3.04) BS01 rna ? GO:0000049 ... B7IA27 31964740
    10 6v39:F (3.04) BS02 rna ? GO:0000049 ... B7IA27 31964740
    11 6v39:F (3.04) BS03 rna ? GO:0000049 ... B7IA27 31964740
    12 6v39:G (3.04) BS01 rna ? GO:0002181 ... B7IA24 31964740
    13 6v39:H (3.04) BS01 rna ? GO:0003735 ... B7IBC3 31964740
    14 6v39:I (3.04) BS01 rna ? GO:0003729 ... B7I9B0 31964740
    15 6v39:J (3.04) BS01 rna ? GO:0003735 ... N9NZ44 31964740
    16 6v39:K (3.04) BS01 rna ? GO:0003735 ... B7IA20 31964740
    17 6v39:L (3.04) BS01 rna ? GO:0000049 ... B7IA32 31964740
    18 6v39:L (3.04) BS02 rna ? GO:0000049 ... B7IA32 31964740
    19 6v39:M (3.04) BS01 rna ? GO:0003735 ... B7IA13 31964740
    20 6v39:N (3.04) BS01 rna ? GO:0003735 ... B7IA23 31964740
    21 6v39:N (3.04) BS02 rna ? GO:0003735 ... B7IA23 31964740
    22 6v39:O (3.04) BS01 rna ? GO:0003735 ... B7IAS9 31964740
    23 6v39:O (3.04) BS02 rna ? GO:0003735 ... B7IAS9 31964740
    24 6v39:P (3.04) BS01 rna ? GO:0000027 ... V5VGC9 31964740
    25 6v39:Q (3.04) BS01 rna ? GO:0003723 ... B7I6V9 31964740
    26 6v39:R (3.04) BS01 rna ? GO:0003735 ... A0A009QSN8 31964740
    27 6v39:S (3.04) BS01 rna ? GO:0000027 ... B7IA37 31964740
    28 6v39:T (3.04) BS01 rna ? GO:0003723 ... B7IA28 31964740
    29 6v39:U (3.04) BS01 rna ? GO:0003723 ... B7I7B6 31964740
    30 6v39:U (3.04) BS02 rna ? GO:0003723 ... B7I7B6 31964740
    31 6v39:V (3.04) BS01 rna ? GO:0003735 ... B7I6V8 31964740
    32 6v39:V (3.04) BS02 rna ? GO:0003735 ... B7I6V8 31964740
    33 6v39:W (3.04) BS01 rna ? GO:0003735 ... S3NQR5 31964740
    34 6v39:X (3.04) BS01 rna ? GO:0003735 ... B7IA31 31964740
    35 6v39:Y (3.04) BS01 rna ? GO:0003735 ... N8V730 31964740
    36 6v39:Z (3.04) BS01 rna ? GO:0003735 ... B7I7A4 31964740
    37 6v39:b (3.04) BS01 rna ? GO:0003735 ... V5VBC2 31964740
    38 6v39:c (3.04) BS01 rna ? GO:0003676 ... V5V9N0 31964740
    39 6v39:d (3.04) BS01 rna ? GO:0003723 ... B7IA15 31964740
    40 6v39:e (3.04) BS01 rna ? GO:0003723 ... B7IA22 31964740
    41 6v39:f (3.04) BS01 rna ? GO:0003735 ... B7IBC1 31964740
    42 6v39:g (3.04) BS01 rna ? GO:0000028 ... B7I7S0 31964740
    43 6v39:h (3.04) BS01 rna ? GO:0003735 ... B7IA25 31964740
    44 6v39:i (3.04) BS01 rna ? GO:0003723 ... V5VBA5 31964740
    45 6v39:j (3.04) BS01 rna N/A GO:0003723 ... N/A 31964740
    46 6v39:k (3.04) BS01 rna ? GO:0003735 ... A0A062C259 31964740
    47 6v39:k (3.04) BS02 peptide ? GO:0003735 ... A0A062C259 31964740
    48 6v39:l (3.04) BS01 rna ? GO:0000049 ... B7I7R9 31964740
    49 6v39:m (3.04) BS01 rna ? GO:0000049 ... B7IA17 31964740
    50 6v39:m (3.04) BS02 rna ? GO:0000049 ... B7IA17 31964740
    51 6v39:n (3.04) BS01 rna ? GO:0003735 ... B7IA26 31964740
    52 6v39:o (3.04) BS01 rna ? GO:0003735 ... B7I3U0 31964740
    53 6v39:o (3.04) BS02 rna ? GO:0003735 ... B7I3U0 31964740
    54 6v39:p (3.04) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 31964740
    55 6v39:q (3.04) BS01 rna ? GO:0003735 ... B7IA30 31964740
    56 6v39:r (3.04) BS01 rna ? GO:0003735 ... A0A150HZL5 31964740
    57 6v39:s (3.04) BS01 rna ? GO:0000028 ... B7IA35 31964740
    58 6v39:t (3.04) BS01 rna ? GO:0003723 ... B7I5N9 31964740
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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