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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6upl:A (7.4) BS01 dna ? GO:0000786 ... P68431 31775157
    2 6upl:A (7.4) BS02 dna ? GO:0000786 ... P68431 31775157
    3 6upl:B (7.4) BS01 dna ? GO:0000781 ... P62805 31775157
    4 6upl:B (7.4) BS02 dna ? GO:0000781 ... P62805 31775157
    5 6upl:C (7.4) BS01 dna ? GO:0000786 ... Q93077 31775157
    6 6upl:D (7.4) BS01 dna ? GO:0000786 ... P62807 31775157
    7 6upl:E (7.4) BS01 dna ? GO:0000786 ... P68431 31775157
    8 6upl:E (7.4) BS02 dna ? GO:0000786 ... P68431 31775157
    9 6upl:F (7.4) BS01 dna ? GO:0000781 ... P62805 31775157
    10 6upl:F (7.4) BS02 dna ? GO:0000781 ... P62805 31775157
    11 6upl:G (7.4) BS01 dna ? GO:0035101 ... Q9Y5B9 31775157
    12 6upl:H (7.4) BS01 dna ? GO:0003677 ... Q08945 31775157
    13 6upl:H (7.4) BS02 dna ? GO:0003677 ... Q08945 31775157
    14 6upl:K (7.4) BS01 dna ? GO:0000786 ... Q93077 31775157
    15 6upl:L (7.4) BS01 dna ? GO:0000786 ... P62807 31775157
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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