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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 169 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6uo1:10 (2.95) BS01 rna ? GO:0003735 ... P60493 31672910
    2 6uo1:10 (2.95) BS02 rna ? GO:0003735 ... P60493 31672910
    3 6uo1:11 (2.95) BS01 rna ? GO:0003735 ... P60494 31672910
    4 6uo1:11 (2.95) BS02 rna ? GO:0003735 ... P60494 31672910
    5 6uo1:12 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 31672910
    6 6uo1:13 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 31672910
    7 6uo1:13 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 31672910
    8 6uo1:14 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 31672910
    9 6uo1:14 (2.95) BS02 ZN ? GO:0003735 ... Q5SJE1 31672910
    10 6uo1:15 (2.95) BS01 rna ? GO:0003735 ... P80339 31672910
    11 6uo1:15 (2.95) BS02 ZN ? GO:0003735 ... P80339 31672910
    12 6uo1:16 (2.95) BS01 rna ? GO:0000049 ... P35871 31672910
    13 6uo1:16 (2.95) BS02 ZN ? GO:0000049 ... P35871 31672910
    14 6uo1:17 (2.95) BS01 rna ? GO:0003735 ... P80340 31672910
    15 6uo1:18 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 31672910
    16 6uo1:19 (2.95) BS01 rna ? GO:0003735 ... Q5SHR2 31672910
    17 6uo1:19 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 31672910
    18 6uo1:1D (2.95) BS01 rna ? GO:0002181 ... P60405 31672910
    19 6uo1:1D (2.95) BS02 rna ? GO:0002181 ... P60405 31672910
    20 6uo1:1E (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 31672910
    21 6uo1:1F (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 31672910
    22 6uo1:1F (2.95) BS02 MG ? GO:0003735 ... Q5SHN9 31672910
    23 6uo1:1F (2.95) BS03 MG ? GO:0003735 ... Q5SHN9 31672910
    24 6uo1:1G (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 31672910
    25 6uo1:1G (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 31672910
    26 6uo1:1G (2.95) BS03 rna ? GO:0000049 ... Q5SHQ0 31672910
    27 6uo1:1G (2.95) BS04 MG ? GO:0000049 ... Q5SHQ0 31672910
    28 6uo1:1H (2.95) BS01 rna ? GO:0002181 ... P0DOY8 31672910
    29 6uo1:1I (2.95) BS01 rna ? GO:0003735 ... Q5SLQ1 31672910
    30 6uo1:1N (2.95) BS01 rna ? GO:0003729 ... P60488 31672910
    31 6uo1:1O (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 31672910
    32 6uo1:1O (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 31672910
    33 6uo1:1O (2.95) BS03 MG ? GO:0003735 ... Q5SHP8 31672910
    34 6uo1:1P (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 31672910
    35 6uo1:1P (2.95) BS02 MG ? GO:0003735 ... Q5SHQ7 31672910
    36 6uo1:1Q (2.95) BS01 rna ? GO:0000049 ... P60489 31672910
    37 6uo1:1Q (2.95) BS02 rna ? GO:0000049 ... P60489 31672910
    38 6uo1:1Q (2.95) BS03 rna ? GO:0000049 ... P60489 31672910
    39 6uo1:1R (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 31672910
    40 6uo1:1R (2.95) BS02 MG ? GO:0003735 ... Q9Z9H5 31672910
    41 6uo1:1R (2.95) BS03 MG ? GO:0003735 ... Q9Z9H5 31672910
    42 6uo1:1S (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 31672910
    43 6uo1:1S (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 31672910
    44 6uo1:1T (2.95) BS01 rna ? GO:0003735 ... P60490 31672910
    45 6uo1:1T (2.95) BS02 rna ? GO:0003735 ... P60490 31672910
    46 6uo1:1T (2.95) BS03 MG ? GO:0003735 ... P60490 31672910
    47 6uo1:1U (2.95) BS01 rna ? GO:0000027 ... P60491 31672910
    48 6uo1:1V (2.95) BS01 rna ? GO:0003723 ... P60492 31672910
    49 6uo1:1V (2.95) BS02 MG ? GO:0003723 ... P60492 31672910
    50 6uo1:1W (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 31672910
    51 6uo1:1X (2.95) BS01 rna ? GO:0000027 ... Q5SHP0 31672910
    52 6uo1:1Y (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 31672910
    53 6uo1:1Y (2.95) BS02 ZN ? GO:0003723 ... Q5SHP9 31672910
    54 6uo1:1Z (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 31672910
    55 6uo1:1Z (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 31672910
    56 6uo1:1b (2.95) BS01 rna ? GO:0003735 ... P80371 31672910
    57 6uo1:1b (2.95) BS02 MG ? GO:0003735 ... P80371 31672910
    58 6uo1:1c (2.95) BS01 rna ? GO:0003676 ... P80372 31672910
    59 6uo1:1d (2.95) BS01 rna ? GO:0003723 ... P80373 31672910
    60 6uo1:1d (2.95) BS02 SF4 ? GO:0003723 ... P80373 31672910
    61 6uo1:1e (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 31672910
    62 6uo1:1e (2.95) BS02 MG ? GO:0003723 ... Q5SHQ5 31672910
    63 6uo1:1f (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 31672910
    64 6uo1:1f (2.95) BS02 MG ? GO:0003735 ... Q5SLP8 31672910
    65 6uo1:1g (2.95) BS01 rna ? GO:0000028 ... P17291 31672910
    66 6uo1:1g (2.95) BS02 rna ? GO:0000028 ... P17291 31672910
    67 6uo1:1h (2.95) BS01 rna ? GO:0003735 ... P0DOY9 31672910
    68 6uo1:1i (2.95) BS01 rna ? GO:0000049 ... P80374 31672910
    69 6uo1:1i (2.95) BS02 rna ? GO:0000049 ... P80374 31672910
    70 6uo1:1j (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 31672910
    71 6uo1:1k (2.95) BS01 rna ? GO:0003735 ... P80376 31672910
    72 6uo1:1k (2.95) BS02 MG ? GO:0003735 ... P80376 31672910
    73 6uo1:1l (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 31672910
    74 6uo1:1l (2.95) BS02 rna ? GO:0000049 ... Q5SHN3 31672910
    75 6uo1:1l (2.95) BS03 MG ? GO:0000049 ... Q5SHN3 31672910
    76 6uo1:1m (2.95) BS01 rna ? GO:0000049 ... P80377 31672910
    77 6uo1:1m (2.95) BS02 rna ? GO:0000049 ... P80377 31672910
    78 6uo1:1m (2.95) BS03 rna ? GO:0000049 ... P80377 31672910
    79 6uo1:1m (2.95) BS04 MG ? GO:0000049 ... P80377 31672910
    80 6uo1:1m (2.95) BS05 MG ? GO:0000049 ... P80377 31672910
    81 6uo1:1n (2.95) BS01 rna ? GO:0003735 ... P0DOY6 31672910
    82 6uo1:1n (2.95) BS02 ZN ? GO:0003735 ... P0DOY6 31672910
    83 6uo1:1o (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 31672910
    84 6uo1:1o (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 31672910
    85 6uo1:1p (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 31672910
    86 6uo1:1q (2.95) BS01 rna ? GO:0003735 ... P0DOY7 31672910
    87 6uo1:1r (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 31672910
    88 6uo1:1s (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 31672910
    89 6uo1:1t (2.95) BS01 rna ? GO:0003723 ... P80380 31672910
    90 6uo1:1t (2.95) BS02 MG ? GO:0003723 ... P80380 31672910
    91 6uo1:20 (2.95) BS01 rna ? GO:0003735 ... P60493 31672910
    92 6uo1:20 (2.95) BS02 rna ? GO:0003735 ... P60493 31672910
    93 6uo1:20 (2.95) BS03 rna ? GO:0003735 ... P60493 31672910
    94 6uo1:21 (2.95) BS01 rna ? GO:0003735 ... P60494 31672910
    95 6uo1:22 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 31672910
    96 6uo1:23 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 31672910
    97 6uo1:23 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 31672910
    98 6uo1:24 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 31672910
    99 6uo1:24 (2.95) BS02 ZN ? GO:0003735 ... Q5SJE1 31672910
    100 6uo1:25 (2.95) BS01 rna ? GO:0003735 ... P80339 31672910
    101 6uo1:25 (2.95) BS02 ZN ? GO:0003735 ... P80339 31672910
    102 6uo1:26 (2.95) BS01 rna ? GO:0000049 ... P35871 31672910
    103 6uo1:26 (2.95) BS02 ZN ? GO:0000049 ... P35871 31672910
    104 6uo1:27 (2.95) BS01 rna ? GO:0003735 ... P80340 31672910
    105 6uo1:28 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 31672910
    106 6uo1:29 (2.95) BS01 rna ? GO:0003735 ... Q5SHR2 31672910
    107 6uo1:29 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 31672910
    108 6uo1:2D (2.95) BS01 rna ? GO:0002181 ... P60405 31672910
    109 6uo1:2D (2.95) BS02 rna ? GO:0002181 ... P60405 31672910
    110 6uo1:2E (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 31672910
    111 6uo1:2E (2.95) BS02 MG ? GO:0003735 ... Q5SHN8 31672910
    112 6uo1:2E (2.95) BS03 MG ? GO:0003735 ... Q5SHN8 31672910
    113 6uo1:2F (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 31672910
    114 6uo1:2F (2.95) BS02 MG ? GO:0003735 ... Q5SHN9 31672910
    115 6uo1:2F (2.95) BS03 MG ? GO:0003735 ... Q5SHN9 31672910
    116 6uo1:2G (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 31672910
    117 6uo1:2G (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 31672910
    118 6uo1:2G (2.95) BS03 rna ? GO:0000049 ... Q5SHQ0 31672910
    119 6uo1:2H (2.95) BS01 rna ? GO:0002181 ... P0DOY8 31672910
    120 6uo1:2I (2.95) BS01 rna ? GO:0003735 ... Q5SLQ1 31672910
    121 6uo1:2N (2.95) BS01 rna ? GO:0003729 ... P60488 31672910
    122 6uo1:2O (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 31672910
    123 6uo1:2O (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 31672910
    124 6uo1:2P (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 31672910
    125 6uo1:2Q (2.95) BS01 rna ? GO:0000049 ... P60489 31672910
    126 6uo1:2Q (2.95) BS02 rna ? GO:0000049 ... P60489 31672910
    127 6uo1:2R (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 31672910
    128 6uo1:2S (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 31672910
    129 6uo1:2S (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 31672910
    130 6uo1:2T (2.95) BS01 rna ? GO:0003735 ... P60490 31672910
    131 6uo1:2T (2.95) BS02 rna ? GO:0003735 ... P60490 31672910
    132 6uo1:2U (2.95) BS01 rna ? GO:0000027 ... P60491 31672910
    133 6uo1:2V (2.95) BS01 rna ? GO:0003723 ... P60492 31672910
    134 6uo1:2W (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 31672910
    135 6uo1:2X (2.95) BS01 rna ? GO:0000027 ... Q5SHP0 31672910
    136 6uo1:2Y (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 31672910
    137 6uo1:2Y (2.95) BS02 ZN ? GO:0003723 ... Q5SHP9 31672910
    138 6uo1:2Z (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 31672910
    139 6uo1:2Z (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 31672910
    140 6uo1:2b (2.95) BS01 rna ? GO:0003735 ... P80371 31672910
    141 6uo1:2c (2.95) BS01 rna ? GO:0003676 ... P80372 31672910
    142 6uo1:2d (2.95) BS01 rna ? GO:0003723 ... P80373 31672910
    143 6uo1:2d (2.95) BS02 SF4 ? GO:0003723 ... P80373 31672910
    144 6uo1:2e (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 31672910
    145 6uo1:2e (2.95) BS02 MG ? GO:0003723 ... Q5SHQ5 31672910
    146 6uo1:2f (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 31672910
    147 6uo1:2g (2.95) BS01 rna ? GO:0000028 ... P17291 31672910
    148 6uo1:2g (2.95) BS02 rna ? GO:0000028 ... P17291 31672910
    149 6uo1:2h (2.95) BS01 rna ? GO:0003735 ... P0DOY9 31672910
    150 6uo1:2i (2.95) BS01 rna ? GO:0000049 ... P80374 31672910
    151 6uo1:2j (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 31672910
    152 6uo1:2k (2.95) BS01 rna ? GO:0003735 ... P80376 31672910
    153 6uo1:2k (2.95) BS02 MG ? GO:0003735 ... P80376 31672910
    154 6uo1:2l (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 31672910
    155 6uo1:2l (2.95) BS02 rna ? GO:0000049 ... Q5SHN3 31672910
    156 6uo1:2m (2.95) BS01 rna ? GO:0000049 ... P80377 31672910
    157 6uo1:2m (2.95) BS02 rna ? GO:0000049 ... P80377 31672910
    158 6uo1:2m (2.95) BS03 rna ? GO:0000049 ... P80377 31672910
    159 6uo1:2n (2.95) BS01 rna ? GO:0003735 ... P0DOY6 31672910
    160 6uo1:2n (2.95) BS02 ZN ? GO:0003735 ... P0DOY6 31672910
    161 6uo1:2o (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 31672910
    162 6uo1:2o (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 31672910
    163 6uo1:2p (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 31672910
    164 6uo1:2q (2.95) BS01 rna ? GO:0003735 ... P0DOY7 31672910
    165 6uo1:2q (2.95) BS02 MG ? GO:0003735 ... P0DOY7 31672910
    166 6uo1:2r (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 31672910
    167 6uo1:2s (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 31672910
    168 6uo1:2t (2.95) BS01 rna ? GO:0003723 ... P80380 31672910
    169 6uo1:2t (2.95) BS02 MG ? GO:0003723 ... P80380 31672910
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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