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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 208 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ucq:10 (3.5) BS01 rna ? GO:0003735 ... P60493 31873307
    2 6ucq:10 (3.5) BS02 rna ? GO:0003735 ... P60493 31873307
    3 6ucq:10 (3.5) BS03 MG ? GO:0003735 ... P60493 31873307
    4 6ucq:11 (3.5) BS01 rna ? GO:0003735 ... P60494 31873307
    5 6ucq:11 (3.5) BS02 MG ? GO:0003735 ... P60494 31873307
    6 6ucq:11 (3.5) BS03 MG ? GO:0003735 ... P60494 31873307
    7 6ucq:12 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 31873307
    8 6ucq:13 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 31873307
    9 6ucq:13 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 31873307
    10 6ucq:14 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 31873307
    11 6ucq:14 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 31873307
    12 6ucq:15 (3.5) BS01 rna ? GO:0003735 ... P80339 31873307
    13 6ucq:15 (3.5) BS02 ZN ? GO:0003735 ... P80339 31873307
    14 6ucq:16 (3.5) BS01 rna ? GO:0000049 ... P35871 31873307
    15 6ucq:16 (3.5) BS02 ZN ? GO:0000049 ... P35871 31873307
    16 6ucq:17 (3.5) BS01 rna ? GO:0003735 ... P80340 31873307
    17 6ucq:18 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 31873307
    18 6ucq:19 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 31873307
    19 6ucq:19 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 31873307
    20 6ucq:1D (3.5) BS01 rna ? GO:0002181 ... P60405 31873307
    21 6ucq:1D (3.5) BS02 MG ? GO:0002181 ... P60405 31873307
    22 6ucq:1D (3.5) BS03 MG ? GO:0002181 ... P60405 31873307
    23 6ucq:1D (3.5) BS04 MG ? GO:0002181 ... P60405 31873307
    24 6ucq:1E (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 31873307
    25 6ucq:1E (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 31873307
    26 6ucq:1E (3.5) BS03 MG ? GO:0003735 ... Q5SHN8 31873307
    27 6ucq:1F (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 31873307
    28 6ucq:1G (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 31873307
    29 6ucq:1G (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 31873307
    30 6ucq:1G (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 31873307
    31 6ucq:1H (3.5) BS01 rna ? GO:0002181 ... P0DOY8 31873307
    32 6ucq:1N (3.5) BS01 rna ? GO:0003729 ... P60488 31873307
    33 6ucq:1N (3.5) BS02 MG ? GO:0003729 ... P60488 31873307
    34 6ucq:1O (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 31873307
    35 6ucq:1O (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 31873307
    36 6ucq:1O (3.5) BS03 MG ? GO:0003735 ... Q5SHP8 31873307
    37 6ucq:1P (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 31873307
    38 6ucq:1P (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 31873307
    39 6ucq:1P (3.5) BS03 MG ? GO:0003735 ... Q5SHQ7 31873307
    40 6ucq:1Q (3.5) BS01 rna ? GO:0000049 ... P60489 31873307
    41 6ucq:1Q (3.5) BS02 rna ? GO:0000049 ... P60489 31873307
    42 6ucq:1Q (3.5) BS03 MG ? GO:0000049 ... P60489 31873307
    43 6ucq:1R (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 31873307
    44 6ucq:1S (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 31873307
    45 6ucq:1S (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 31873307
    46 6ucq:1T (3.5) BS01 rna ? GO:0003735 ... P60490 31873307
    47 6ucq:1T (3.5) BS02 rna ? GO:0003735 ... P60490 31873307
    48 6ucq:1T (3.5) BS03 MG ? GO:0003735 ... P60490 31873307
    49 6ucq:1U (3.5) BS01 rna ? GO:0000027 ... P60491 31873307
    50 6ucq:1V (3.5) BS01 rna ? GO:0003723 ... P60492 31873307
    51 6ucq:1W (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 31873307
    52 6ucq:1X (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 31873307
    53 6ucq:1Y (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 31873307
    54 6ucq:1Y (3.5) BS02 MG ? GO:0003723 ... Q5SHP9 31873307
    55 6ucq:1Y (3.5) BS03 ZN ? GO:0003723 ... Q5SHP9 31873307
    56 6ucq:1Z (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 31873307
    57 6ucq:1Z (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 31873307
    58 6ucq:1b (3.5) BS01 rna ? GO:0003735 ... P80371 31873307
    59 6ucq:1b (3.5) BS02 MG ? GO:0003735 ... P80371 31873307
    60 6ucq:1b (3.5) BS03 MG ? GO:0003735 ... P80371 31873307
    61 6ucq:1b (3.5) BS04 MG ? GO:0003735 ... P80371 31873307
    62 6ucq:1b (3.5) BS05 MG ? GO:0003735 ... P80371 31873307
    63 6ucq:1b (3.5) BS06 MG ? GO:0003735 ... P80371 31873307
    64 6ucq:1b (3.5) BS07 MG ? GO:0003735 ... P80371 31873307
    65 6ucq:1b (3.5) BS08 MG ? GO:0003735 ... P80371 31873307
    66 6ucq:1b (3.5) BS09 MG ? GO:0003735 ... P80371 31873307
    67 6ucq:1c (3.5) BS01 rna ? GO:0003676 ... P80372 31873307
    68 6ucq:1d (3.5) BS01 rna ? GO:0003723 ... P80373 31873307
    69 6ucq:1d (3.5) BS02 SF4 ? GO:0003723 ... P80373 31873307
    70 6ucq:1d (3.5) BS03 MG ? GO:0003723 ... P80373 31873307
    71 6ucq:1e (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 31873307
    72 6ucq:1e (3.5) BS02 MG ? GO:0003723 ... Q5SHQ5 31873307
    73 6ucq:1e (3.5) BS03 MG ? GO:0003723 ... Q5SHQ5 31873307
    74 6ucq:1f (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 31873307
    75 6ucq:1g (3.5) BS01 rna ? GO:0000028 ... P17291 31873307
    76 6ucq:1g (3.5) BS02 rna ? GO:0000028 ... P17291 31873307
    77 6ucq:1h (3.5) BS01 rna ? GO:0003735 ... P0DOY9 31873307
    78 6ucq:1i (3.5) BS01 rna ? GO:0000049 ... P80374 31873307
    79 6ucq:1i (3.5) BS02 rna ? GO:0000049 ... P80374 31873307
    80 6ucq:1j (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 31873307
    81 6ucq:1k (3.5) BS01 rna ? GO:0003735 ... P80376 31873307
    82 6ucq:1l (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 31873307
    83 6ucq:1m (3.5) BS01 rna ? GO:0000049 ... P80377 31873307
    84 6ucq:1m (3.5) BS02 rna ? GO:0000049 ... P80377 31873307
    85 6ucq:1m (3.5) BS03 MG ? GO:0000049 ... P80377 31873307
    86 6ucq:1n (3.5) BS01 rna ? GO:0003735 ... P0DOY6 31873307
    87 6ucq:1n (3.5) BS02 MG ? GO:0003735 ... P0DOY6 31873307
    88 6ucq:1n (3.5) BS03 MG ? GO:0003735 ... P0DOY6 31873307
    89 6ucq:1n (3.5) BS04 ZN ? GO:0003735 ... P0DOY6 31873307
    90 6ucq:1o (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 31873307
    91 6ucq:1o (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 31873307
    92 6ucq:1p (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 31873307
    93 6ucq:1p (3.5) BS02 MG ? GO:0003735 ... Q5SJH3 31873307
    94 6ucq:1q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 31873307
    95 6ucq:1r (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 31873307
    96 6ucq:1s (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 31873307
    97 6ucq:1s (3.5) BS02 MG ? GO:0000028 ... Q5SHP2 31873307
    98 6ucq:1t (3.5) BS01 rna ? GO:0003723 ... P80380 31873307
    99 6ucq:1v (3.5) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 31873307
    100 6ucq:1v (3.5) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 31873307
    101 6ucq:1v (3.5) BS03 MG ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 31873307
    102 6ucq:1v (3.5) BS04 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 31873307
    103 6ucq:1w (3.5) BS01 rna ? GO:0005737 ... Q9WX76 31873307
    104 6ucq:20 (3.5) BS01 rna ? GO:0003735 ... P60493 31873307
    105 6ucq:20 (3.5) BS02 rna ? GO:0003735 ... P60493 31873307
    106 6ucq:20 (3.5) BS03 MG ? GO:0003735 ... P60493 31873307
    107 6ucq:20 (3.5) BS04 MG ? GO:0003735 ... P60493 31873307
    108 6ucq:21 (3.5) BS01 rna ? GO:0003735 ... P60494 31873307
    109 6ucq:21 (3.5) BS02 MG ? GO:0003735 ... P60494 31873307
    110 6ucq:22 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 31873307
    111 6ucq:23 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 31873307
    112 6ucq:23 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 31873307
    113 6ucq:24 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 31873307
    114 6ucq:24 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 31873307
    115 6ucq:25 (3.5) BS01 rna ? GO:0003735 ... P80339 31873307
    116 6ucq:25 (3.5) BS02 ZN ? GO:0003735 ... P80339 31873307
    117 6ucq:26 (3.5) BS01 rna ? GO:0000049 ... P35871 31873307
    118 6ucq:26 (3.5) BS02 ZN ? GO:0000049 ... P35871 31873307
    119 6ucq:27 (3.5) BS01 rna ? GO:0003735 ... P80340 31873307
    120 6ucq:28 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 31873307
    121 6ucq:28 (3.5) BS02 MG ? GO:0003735 ... Q5SKU1 31873307
    122 6ucq:29 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 31873307
    123 6ucq:29 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 31873307
    124 6ucq:2D (3.5) BS01 rna ? GO:0002181 ... P60405 31873307
    125 6ucq:2D (3.5) BS02 rna ? GO:0002181 ... P60405 31873307
    126 6ucq:2D (3.5) BS03 MG ? GO:0002181 ... P60405 31873307
    127 6ucq:2D (3.5) BS04 MG ? GO:0002181 ... P60405 31873307
    128 6ucq:2D (3.5) BS05 MG ? GO:0002181 ... P60405 31873307
    129 6ucq:2D (3.5) BS06 MG ? GO:0002181 ... P60405 31873307
    130 6ucq:2E (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 31873307
    131 6ucq:2E (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 31873307
    132 6ucq:2F (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 31873307
    133 6ucq:2G (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 31873307
    134 6ucq:2G (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 31873307
    135 6ucq:2G (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 31873307
    136 6ucq:2H (3.5) BS01 rna ? GO:0002181 ... P0DOY8 31873307
    137 6ucq:2N (3.5) BS01 rna ? GO:0003729 ... P60488 31873307
    138 6ucq:2O (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 31873307
    139 6ucq:2O (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 31873307
    140 6ucq:2O (3.5) BS03 MG ? GO:0003735 ... Q5SHP8 31873307
    141 6ucq:2P (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 31873307
    142 6ucq:2P (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 31873307
    143 6ucq:2Q (3.5) BS01 rna ? GO:0000049 ... P60489 31873307
    144 6ucq:2Q (3.5) BS02 rna ? GO:0000049 ... P60489 31873307
    145 6ucq:2Q (3.5) BS03 MG ? GO:0000049 ... P60489 31873307
    146 6ucq:2Q (3.5) BS04 MG ? GO:0000049 ... P60489 31873307
    147 6ucq:2Q (3.5) BS05 MG ? GO:0000049 ... P60489 31873307
    148 6ucq:2R (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 31873307
    149 6ucq:2S (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 31873307
    150 6ucq:2S (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 31873307
    151 6ucq:2S (3.5) BS03 MG ? GO:0003735 ... Q5SHQ4 31873307
    152 6ucq:2T (3.5) BS01 rna ? GO:0003735 ... P60490 31873307
    153 6ucq:2T (3.5) BS02 rna ? GO:0003735 ... P60490 31873307
    154 6ucq:2U (3.5) BS01 rna ? GO:0000027 ... P60491 31873307
    155 6ucq:2V (3.5) BS01 rna ? GO:0003723 ... P60492 31873307
    156 6ucq:2W (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 31873307
    157 6ucq:2X (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 31873307
    158 6ucq:2X (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 31873307
    159 6ucq:2Y (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 31873307
    160 6ucq:2Y (3.5) BS02 MG ? GO:0003723 ... Q5SHP9 31873307
    161 6ucq:2Y (3.5) BS03 ZN ? GO:0003723 ... Q5SHP9 31873307
    162 6ucq:2Z (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 31873307
    163 6ucq:2Z (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 31873307
    164 6ucq:2Z (3.5) BS03 MG ? GO:0003723 ... Q5SHZ1 31873307
    165 6ucq:2b (3.5) BS01 rna ? GO:0003735 ... P80371 31873307
    166 6ucq:2b (3.5) BS02 MG ? GO:0003735 ... P80371 31873307
    167 6ucq:2b (3.5) BS03 MG ? GO:0003735 ... P80371 31873307
    168 6ucq:2c (3.5) BS01 rna ? GO:0003676 ... P80372 31873307
    169 6ucq:2d (3.5) BS01 rna ? GO:0003723 ... P80373 31873307
    170 6ucq:2d (3.5) BS02 MG ? GO:0003723 ... P80373 31873307
    171 6ucq:2d (3.5) BS03 MG ? GO:0003723 ... P80373 31873307
    172 6ucq:2d (3.5) BS04 SF4 ? GO:0003723 ... P80373 31873307
    173 6ucq:2d (3.5) BS05 MG ? GO:0003723 ... P80373 31873307
    174 6ucq:2e (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 31873307
    175 6ucq:2f (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 31873307
    176 6ucq:2g (3.5) BS01 rna ? GO:0000028 ... P17291 31873307
    177 6ucq:2g (3.5) BS02 MG ? GO:0000028 ... P17291 31873307
    178 6ucq:2h (3.5) BS01 rna ? GO:0003735 ... P0DOY9 31873307
    179 6ucq:2h (3.5) BS02 MG ? GO:0003735 ... P0DOY9 31873307
    180 6ucq:2h (3.5) BS03 MG ? GO:0003735 ... P0DOY9 31873307
    181 6ucq:2i (3.5) BS01 rna ? GO:0000049 ... P80374 31873307
    182 6ucq:2i (3.5) BS02 MG ? GO:0000049 ... P80374 31873307
    183 6ucq:2j (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 31873307
    184 6ucq:2k (3.5) BS01 rna ? GO:0003735 ... P80376 31873307
    185 6ucq:2k (3.5) BS02 MG ? GO:0003735 ... P80376 31873307
    186 6ucq:2l (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 31873307
    187 6ucq:2l (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 31873307
    188 6ucq:2l (3.5) BS03 MG ? GO:0000049 ... Q5SHN3 31873307
    189 6ucq:2m (3.5) BS01 rna ? GO:0000049 ... P80377 31873307
    190 6ucq:2n (3.5) BS01 rna ? GO:0003735 ... P0DOY6 31873307
    191 6ucq:2n (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 31873307
    192 6ucq:2o (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 31873307
    193 6ucq:2o (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 31873307
    194 6ucq:2p (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 31873307
    195 6ucq:2q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 31873307
    196 6ucq:2q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 31873307
    197 6ucq:2q (3.5) BS03 MG ? GO:0003735 ... P0DOY7 31873307
    198 6ucq:2q (3.5) BS04 MG ? GO:0003735 ... P0DOY7 31873307
    199 6ucq:2r (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 31873307
    200 6ucq:2r (3.5) BS02 MG ? GO:0003735 ... Q5SLQ0 31873307
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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