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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 359 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6u42:0A (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    2 6u42:0A (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    3 6u42:0B (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    4 6u42:0C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    5 6u42:0E (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    6 6u42:0F (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    7 6u42:0G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    8 6u42:0H (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    9 6u42:0I (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    10 6u42:0I (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    11 6u42:0J (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    12 6u42:0K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    13 6u42:0L (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    14 6u42:0M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    15 6u42:0N (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    16 6u42:0O (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    17 6u42:0O (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    18 6u42:0P (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    19 6u42:0Q (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    20 6u42:0R (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    21 6u42:0S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    22 6u42:0U (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    23 6u42:0V (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    24 6u42:0W (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    25 6u42:0X (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    26 6u42:0Y (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    27 6u42:0Z (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    28 6u42:1A (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    29 6u42:1B (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    30 6u42:1C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    31 6u42:1D (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    32 6u42:1E (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    33 6u42:1F (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    34 6u42:1G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    35 6u42:1H (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    36 6u42:1K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    37 6u42:1L (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    38 6u42:1M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    39 6u42:1N (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    40 6u42:1O (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    41 6u42:1P (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    42 6u42:1Q (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    43 6u42:1R (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    44 6u42:1S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    45 6u42:1T (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    46 6u42:1U (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    47 6u42:1V (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    48 6u42:1W (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    49 6u42:1X (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    50 6u42:1Z (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    51 6u42:2 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    52 6u42:2A (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    53 6u42:2B (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 31668805
    54 6u42:2B (3.4) BS02 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    55 6u42:2C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    56 6u42:2D (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    57 6u42:2E (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    58 6u42:2F (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    59 6u42:2G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    60 6u42:2H (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    61 6u42:2I (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    62 6u42:2J (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    63 6u42:2K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    64 6u42:2L (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    65 6u42:2M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    66 6u42:2N (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    67 6u42:2P (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    68 6u42:2Q (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    69 6u42:2R (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 31668805
    70 6u42:2R (3.4) BS02 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    71 6u42:2S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    72 6u42:2T (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    73 6u42:2U (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    74 6u42:2V (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    75 6u42:2W (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    76 6u42:2X (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    77 6u42:2Y (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    78 6u42:2Z (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    79 6u42:3 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    80 6u42:3A (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    81 6u42:3B (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    82 6u42:3C (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    83 6u42:3D (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    84 6u42:3F (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    85 6u42:3G (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    86 6u42:3H (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    87 6u42:3I (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    88 6u42:3J (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    89 6u42:3K (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    90 6u42:3L (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    91 6u42:3M (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    92 6u42:3N (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    93 6u42:3O (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    94 6u42:3P (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    95 6u42:3Q (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    96 6u42:3Q (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    97 6u42:3R (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    98 6u42:3S (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    99 6u42:3T (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    100 6u42:4 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    101 6u42:5 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    102 6u42:5H (3.4) BS01 peptide ? GO:0005737 ... A8IVJ1 31668805
    103 6u42:6 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    104 6u42:7 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    105 6u42:8 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    106 6u42:9 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    107 6u42:A0 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    108 6u42:A1 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    109 6u42:A2 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    110 6u42:A2 (3.4) BS02 MG 3.6.5.- GO:0005200 ... P09204 31668805
    111 6u42:A3 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    112 6u42:A4 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    113 6u42:A5 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    114 6u42:A7 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    115 6u42:A8 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    116 6u42:A9 (3.4) BS01 GTP ? GO:0003924 ... P04690 31668805
    117 6u42:A9 (3.4) BS02 GDP ? GO:0003924 ... P04690 31668805
    118 6u42:B0 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    119 6u42:B1 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    120 6u42:B2 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    121 6u42:B3 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    122 6u42:B4 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    123 6u42:B5 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    124 6u42:B7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    125 6u42:B8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    126 6u42:B9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    127 6u42:C0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    128 6u42:C1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    129 6u42:C2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    130 6u42:C4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    131 6u42:C5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    132 6u42:C6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    133 6u42:C7 (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 31668805
    134 6u42:C7 (3.4) BS02 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    135 6u42:C8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    136 6u42:C9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    137 6u42:D0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    138 6u42:D1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    139 6u42:D2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    140 6u42:D3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    141 6u42:D4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    142 6u42:D5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    143 6u42:D6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    144 6u42:D7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    145 6u42:D8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    146 6u42:E0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    147 6u42:E1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    148 6u42:E2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    149 6u42:E3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    150 6u42:E4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    151 6u42:E5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    152 6u42:E6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    153 6u42:E7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    154 6u42:E8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    155 6u42:E9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    156 6u42:F0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    157 6u42:F1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    158 6u42:F2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    159 6u42:F3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    160 6u42:F5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    161 6u42:F6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    162 6u42:F7 (3.4) BS01 MG 3.6.5.- GO:0005200 ... P09204 31668805
    163 6u42:F7 (3.4) BS02 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    164 6u42:F8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    165 6u42:F9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    166 6u42:G0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    167 6u42:G1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    168 6u42:G2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    169 6u42:G3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    170 6u42:G4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    171 6u42:G5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    172 6u42:G6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    173 6u42:G7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    174 6u42:G8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    175 6u42:G9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    176 6u42:H1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    177 6u42:H2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    178 6u42:H3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    179 6u42:H4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    180 6u42:H5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    181 6u42:H6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    182 6u42:H7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    183 6u42:H8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    184 6u42:H9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    185 6u42:I0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    186 6u42:I1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    187 6u42:I2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    188 6u42:I3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    189 6u42:I4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    190 6u42:I5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    191 6u42:I7 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    192 6u42:I8 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    193 6u42:I9 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    194 6u42:J0 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    195 6u42:J1 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    196 6u42:J2 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    197 6u42:J3 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    198 6u42:J4 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    199 6u42:J5 (3.4) BS01 GTP 3.6.5.- GO:0005200 ... P09204 31668805
    200 6u42:J6 (3.4) BS01 GDP ? GO:0003924 ... P04690 31668805
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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