Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tnn:H (3.07) BS01 rna 3.1.26.- GO:0004519 ... O31418 32991829
    2 6tnn:I (3.07) BS01 rna 3.1.26.- GO:0004519 ... O31418 32991829
    3 6tnn:W (3.07) BS01 rna ? GO:0002181 ... P42919 32991829
    4 6tnn:W (3.07) BS02 MG ? GO:0002181 ... P42919 32991829
    5 6tnn:X (3.07) BS01 rna ? GO:0003735 ... P42920 32991829
    6 6tnn:Y (3.07) BS01 rna ? GO:0003735 ... P42921 32991829
    7 6tnn:Z (3.07) BS01 rna ? GO:0000049 ... P12877 32991829
    8 6tnn:Z (3.07) BS02 rna ? GO:0000049 ... P12877 32991829
    9 6tnn:a (3.07) BS01 rna ? GO:0002181 ... P46898 32991829
    10 6tnn:b (3.07) BS01 rna ? GO:0003735 ... P42923 32991829
    11 6tnn:c (3.07) BS01 rna ? GO:0003729 ... P70974 32991829
    12 6tnn:d (3.07) BS01 rna ? GO:0003735 ... P12875 32991829
    13 6tnn:e (3.07) BS01 rna ? GO:0003735 ... P19946 32991829
    14 6tnn:f (3.07) BS01 rna ? GO:0000049 ... P14577 32991829
    15 6tnn:g (3.07) BS01 rna ? GO:0003735 ... P20277 32991829
    16 6tnn:h (3.07) BS01 rna ? GO:0003735 ... P46899 32991829
    17 6tnn:h (3.07) BS02 rna ? GO:0003735 ... P46899 32991829
    18 6tnn:i (3.07) BS01 rna ? GO:0003735 ... O31742 32991829
    19 6tnn:j (3.07) BS01 rna ? GO:0000027 ... P55873 32991829
    20 6tnn:k (3.07) BS01 rna ? GO:0003723 ... P26908 32991829
    21 6tnn:l (3.07) BS01 rna ? GO:0003735 ... P42060 32991829
    22 6tnn:m (3.07) BS01 rna ? GO:0000027 ... P42924 32991829
    23 6tnn:n (3.07) BS01 rna ? GO:0003677 ... P0CI78 32991829
    24 6tnn:o (3.07) BS01 rna ? GO:0003735 ... P05657 32991829
    25 6tnn:o (3.07) BS02 rna ? GO:0003735 ... P05657 32991829
    26 6tnn:p (3.07) BS01 rna ? GO:0003735 ... O34687 32991829
    27 6tnn:p (3.07) BS02 ZN ? GO:0003735 ... O34687 32991829
    28 6tnn:q (3.07) BS01 rna ? GO:0003735 ... P56849 32991829
    29 6tnn:q (3.07) BS02 ZN ? GO:0003735 ... P56849 32991829
    30 6tnn:r (3.07) BS01 rna ? GO:0003735 ... P05647 32991829
    31 6tnn:s (3.07) BS01 rna ? GO:0003735 ... P55874 32991829
    32 6tnn:t (3.07) BS01 rna ? GO:0003735 ... P20278 32991829
    33 6tnn:t (3.07) BS02 ZN ? GO:0003735 ... P20278 32991829
    34 6tnn:u (3.07) BS01 rna ? GO:0003735 ... P37807 32991829
    35 6tnn:v (3.07) BS01 rna ? GO:0003735 ... P12873 32991829
    36 6tnn:w (3.07) BS01 rna ? GO:0003735 ... P19947 32991829
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218