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BioLiP
Download all results in tab-seperated text for 77 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6th6:Ab (2.55) BS01 rna ? GO:0000028 ... Q5JJD2 32555463
    2 6th6:Ac (2.55) BS01 rna ? GO:0003676 ... Q5JDH5 32555463
    3 6th6:Ad (2.55) BS01 rna ? GO:0003735 ... Q5JGM4 32555463
    4 6th6:Ad (2.55) BS02 rna ? GO:0003735 ... Q5JGM4 32555463
    5 6th6:Ae (2.55) BS01 rna ? GO:0003723 ... Q5JJF2 32555463
    6 6th6:Af (2.55) BS01 rna ? GO:0003723 ... Q5JJG0 32555463
    7 6th6:Ag (2.55) BS01 rna ? GO:0003723 ... Q5JJG8 32555463
    8 6th6:Ag (2.55) BS02 ZN ? GO:0003723 ... Q5JJG8 32555463
    9 6th6:Ah (2.55) BS01 rna ? GO:0003735 ... Q5JDK8 32555463
    10 6th6:Ai (2.55) BS01 rna ? GO:0000028 ... Q5JE04 32555463
    11 6th6:Aj (2.55) BS01 rna ? GO:0003735 ... Q5JJG3 32555463
    12 6th6:Ak (2.55) BS01 rna ? GO:0000462 ... Q5JGF3 32555463
    13 6th6:Ak (2.55) BS02 rna ? GO:0000462 ... Q5JGF3 32555463
    14 6th6:Al (2.55) BS01 rna ? GO:0000462 ... Q5JJE2 32555463
    15 6th6:Am (2.55) BS01 rna ? GO:0000049 ... Q5JFZ5 32555463
    16 6th6:An (2.55) BS01 rna ? GO:0003735 ... Q5JJF3 32555463
    17 6th6:Ao (2.55) BS01 rna ? GO:0003735 ... Q5JE20 32555463
    18 6th6:Ap (2.55) BS01 rna ? GO:0003676 ... Q5JJF1 32555463
    19 6th6:Aq (2.55) BS01 rna ? GO:0003735 ... Q5JGJ4 32555463
    20 6th6:Ar (2.55) BS01 rna ? GO:0002181 ... Q5JJG2 32555463
    21 6th6:Ar (2.55) BS02 ZN ? GO:0002181 ... Q5JJG2 32555463
    22 6th6:As (2.55) BS01 rna ? GO:0003735 ... Q5JDH9 32555463
    23 6th6:As (2.55) BS02 ZN ? GO:0003735 ... Q5JDH9 32555463
    24 6th6:At (2.55) BS01 rna ? GO:0003735 ... Q5JDC7 32555463
    25 6th6:Au (2.55) BS01 rna ? GO:0000028 ... Q5JDH3 32555463
    26 6th6:Av (2.55) BS01 rna ? GO:0000028 ... Q5JGN5 32555463
    27 6th6:Aw (2.55) BS01 rna ? GO:0003735 ... Q5JIY8 32555463
    28 6th6:Ax (2.55) BS01 rna ? GO:0000028 ... Q5JE50 32555463
    29 6th6:Ax (2.55) BS02 ZN ? GO:0000028 ... Q5JE50 32555463
    30 6th6:Ay (2.55) BS01 rna ? GO:0000028 ... Q5JGR4 32555463
    31 6th6:Az (2.55) BS01 ZN ? N/A Q5JFE2 32555463
    32 6th6:Az (2.55) BS02 ZN ? N/A Q5JFE2 32555463
    33 6th6:BC (2.55) BS01 rna ? GO:0002181 ... Q5JDH2 32555463
    34 6th6:BD (2.55) BS01 rna ? GO:0003723 ... Q5JDJ0 32555463
    35 6th6:BE (2.55) BS01 rna ? GO:0003723 ... Q5JDI0 32555463
    36 6th6:BF (2.55) BS01 rna ? GO:0000049 ... Q5JJG1 32555463
    37 6th6:BF (2.55) BS02 rna ? GO:0000049 ... Q5JJG1 32555463
    38 6th6:BG (2.55) BS01 rna ? GO:0002181 ... Q5JJG4 32555463
    39 6th6:BH (2.55) BS01 rna ? GO:0001682 ... Q5JGR3 32555463
    40 6th6:BI (2.55) BS01 rna ? GO:0001682 ... Q5JGR3 32555463
    41 6th6:BJ (2.55) BS01 rna ? GO:0000027 ... Q5JDI6 32555463
    42 6th6:BK (2.55) BS01 rna ? GO:0003729 ... Q5JJF6 32555463
    43 6th6:BL (2.55) BS01 rna ? GO:0003735 ... Q5JJF8 32555463
    44 6th6:BM (2.55) BS01 rna ? GO:0003723 ... Q5JJE4 32555463
    45 6th6:BN (2.55) BS01 rna ? GO:0003723 ... Q5JJE4 32555463
    46 6th6:BO (2.55) BS01 rna ? GO:0003735 ... Q5JJH0 32555463
    47 6th6:BP (2.55) BS01 rna ? GO:0002181 ... Q5JH43 32555463
    48 6th6:BQ (2.55) BS01 rna ? GO:0000027 ... Q5JJG7 32555463
    49 6th6:BQ (2.55) BS02 rna ? GO:0000027 ... Q5JJG7 32555463
    50 6th6:BR (2.55) BS01 rna ? GO:0003723 ... Q5JJF5 32555463
    51 6th6:BS (2.55) BS01 rna ? GO:0003723 ... Q5JJG6 32555463
    52 6th6:BT (2.55) BS01 rna ? GO:0003735 ... Q5JGT3 32555463
    53 6th6:BU (2.55) BS01 rna ? GO:0003735 ... Q5JI51 32555463
    54 6th6:BV (2.55) BS01 rna ? GO:0002181 ... Q5JDH4 32555463
    55 6th6:BW (2.55) BS01 rna ? GO:0000027 ... Q5JDH1 32555463
    56 6th6:BX (2.55) BS01 rna ? GO:0002181 ... Q5JJF9 32555463
    57 6th6:BY (2.55) BS01 rna ? GO:0003735 ... Q5JGR5 32555463
    58 6th6:BY (2.55) BS02 rna ? GO:0003735 ... Q5JGR5 32555463
    59 6th6:BY (2.55) BS03 ZN ? GO:0003735 ... Q5JGR5 32555463
    60 6th6:BZ (2.55) BS01 rna ? GO:0003735 ... Q5JDH6 32555463
    61 6th6:Ba (2.55) BS01 rna ? GO:0000463 ... Q5JJG9 32555463
    62 6th6:Ba (2.55) BS02 rna ? GO:0000463 ... Q5JJG9 32555463
    63 6th6:Bb (2.55) BS01 rna ? GO:0003723 ... Q5JE35 32555463
    64 6th6:Bc (2.55) BS01 rna ? GO:0002181 ... Q5JGT5 32555463
    65 6th6:Bd (2.55) BS01 rna ? GO:0003735 ... Q5JJG5 32555463
    66 6th6:Be (2.55) BS01 rna ? GO:0003735 ... Q5JJF7 32555463
    67 6th6:Be (2.55) BS02 ZN ? GO:0003735 ... Q5JJF7 32555463
    68 6th6:Bg (2.55) BS01 rna ? GO:0003723 ... Q5JDM6 32555463
    69 6th6:Bg (2.55) BS02 ZN ? GO:0003723 ... Q5JDM6 32555463
    70 6th6:Bh (2.55) BS01 rna ? GO:0003723 ... Q5JIE1 32555463
    71 6th6:Bh (2.55) BS02 ZN ? GO:0003723 ... Q5JIE1 32555463
    72 6th6:Bi (2.55) BS01 rna ? GO:0003735 ... Q5JGT6 32555463
    73 6th6:Bj (2.55) BS01 rna ? GO:0003735 ... Q5JJD3 32555463
    74 6th6:Bj (2.55) BS02 ZN ? GO:0003735 ... Q5JJD3 32555463
    75 6th6:Bk (2.55) BS01 rna ? GO:0005840 ... Q5JEV0 32555463
    76 6th6:Bl (2.55) BS01 rna ? GO:0003735 ... Q5JE51 32555463
    77 6th6:Bl (2.55) BS02 ZN ? GO:0003735 ... Q5JE51 32555463
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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