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BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tb3:A (2.8) BS01 rna ? GO:0000054 ... P05750 32299921
    2 6tb3:AA (2.8) BS01 rna ? GO:0000470 ... P17076 32299921
    3 6tb3:AA (2.8) BS02 rna ? GO:0000470 ... P17076 32299921
    4 6tb3:AB (2.8) BS01 rna ? GO:0002181 ... P0CX41 32299921
    5 6tb3:AC (2.8) BS01 rna ? GO:0002181 ... P05745 32299921
    6 6tb3:AD (2.8) BS01 rna ? GO:0002181 ... P05738 32299921
    7 6tb3:AE (2.8) BS01 rna ? N/A P04449 32299921
    8 6tb3:AF (2.8) BS01 rna ? GO:0000448 ... P49166 32299921
    9 6tb3:AF (2.8) BS02 rna ? GO:0000448 ... P49166 32299921
    10 6tb3:AF (2.8) BS03 ZN ? GO:0000448 ... P49166 32299921
    11 6tb3:AG (2.8) BS01 rna ? GO:0000027 ... Q3E757 32299921
    12 6tb3:AG (2.8) BS02 rna ? GO:0000027 ... Q3E757 32299921
    13 6tb3:AG (2.8) BS03 rna ? GO:0000027 ... Q3E757 32299921
    14 6tb3:AH (2.8) BS01 rna ? GO:0003735 ... P04456 32299921
    15 6tb3:AH (2.8) BS02 rna ? GO:0003735 ... P04456 32299921
    16 6tb3:AI (2.8) BS01 rna ? GO:0002181 ... P49167 32299921
    17 6tb3:AJ (2.8) BS01 rna ? GO:0002181 ... Q12690 32299921
    18 6tb3:AJ (2.8) BS02 rna ? GO:0002181 ... Q12690 32299921
    19 6tb3:AK (2.8) BS01 rna ? GO:0002181 ... P05743 32299921
    20 6tb3:AK (2.8) BS02 rna ? GO:0002181 ... P05743 32299921
    21 6tb3:AL (2.8) BS01 rna ? GO:0002181 ... P04650 32299921
    22 6tb3:AL (2.8) BS02 rna ? GO:0002181 ... P04650 32299921
    23 6tb3:AM (2.8) BS01 rna ? GO:0000027 ... P36105 32299921
    24 6tb3:AN (2.8) BS01 rna ? GO:0002181 ... P0C2H6 32299921
    25 6tb3:AO (2.8) BS01 rna ? GO:0003735 ... P0CH08 32299921
    26 6tb3:AO (2.8) BS02 ZN ? GO:0003735 ... P0CH08 32299921
    27 6tb3:AP (2.8) BS01 rna ? GO:0002181 ... P0CX27 32299921
    28 6tb3:AP (2.8) BS02 ZN ? GO:0002181 ... P0CX27 32299921
    29 6tb3:AQ (2.8) BS01 rna ? GO:0002181 ... P05748 32299921
    30 6tb3:AQ (2.8) BS02 rna ? GO:0002181 ... P05748 32299921
    31 6tb3:AR (2.8) BS01 rna ? GO:0002181 ... P02406 32299921
    32 6tb3:AT (2.8) BS01 rna ? GO:0002181 ... P0CX25 32299921
    33 6tb3:AT (2.8) BS02 ZN ? GO:0002181 ... P0CX25 32299921
    34 6tb3:AU (2.8) BS01 rna ? GO:0000470 ... P26784 32299921
    35 6tb3:AV (2.8) BS01 rna ? GO:0002181 ... P05747 32299921
    36 6tb3:AW (2.8) BS01 rna ? GO:0002181 ... P0CX45 32299921
    37 6tb3:AW (2.8) BS02 rna ? GO:0002181 ... P0CX45 32299921
    38 6tb3:AW (2.8) BS03 MG ? GO:0002181 ... P0CX45 32299921
    39 6tb3:AW (2.8) BS04 MG ? GO:0002181 ... P0CX45 32299921
    40 6tb3:AX (2.8) BS01 rna ? GO:0000448 ... P05740 32299921
    41 6tb3:AX (2.8) BS02 rna ? GO:0000448 ... P05740 32299921
    42 6tb3:AY (2.8) BS01 rna ? GO:0002181 ... P14120 32299921
    43 6tb3:B (2.8) BS01 rna N/A GO:0003723 ... N/A 32299921
    44 6tb3:B (2.8) BS02 MG N/A GO:0003723 ... N/A 32299921
    45 6tb3:BA (2.8) BS01 rna ? GO:0000027 ... P14126 32299921
    46 6tb3:BA (2.8) BS02 MG ? GO:0000027 ... P14126 32299921
    47 6tb3:BB (2.8) BS01 rna ? GO:0002181 ... P0CX49 32299921
    48 6tb3:BC (2.8) BS01 rna ? GO:0002181 ... P0C2H8 32299921
    49 6tb3:BD (2.8) BS01 rna ? GO:0000027 ... P41805 32299921
    50 6tb3:BD (2.8) BS02 rna ? GO:0000027 ... P41805 32299921
    51 6tb3:BD (2.8) BS03 rna ? GO:0000027 ... P41805 32299921
    52 6tb3:BE (2.8) BS01 rna ? GO:0002181 ... P10664 32299921
    53 6tb3:BE (2.8) BS02 rna ? GO:0002181 ... P10664 32299921
    54 6tb3:BF (2.8) BS01 rna ? GO:0002181 ... P0CX82 32299921
    55 6tb3:BF (2.8) BS02 rna ? GO:0002181 ... P0CX82 32299921
    56 6tb3:BG (2.8) BS01 rna ? GO:0002181 ... P38061 32299921
    57 6tb3:BG (2.8) BS02 MG ? GO:0002181 ... P38061 32299921
    58 6tb3:BH (2.8) BS01 rna ? GO:0002181 ... P0CX23 32299921
    59 6tb3:BH (2.8) BS02 rna ? GO:0002181 ... P0CX23 32299921
    60 6tb3:BI (2.8) BS01 rna ? GO:0000027 ... P26321 32299921
    61 6tb3:BI (2.8) BS02 rna ? GO:0000027 ... P26321 32299921
    62 6tb3:BJ (2.8) BS01 rna ? GO:0002181 ... Q02753 32299921
    63 6tb3:BJ (2.8) BS02 rna ? GO:0002181 ... Q02753 32299921
    64 6tb3:BK (2.8) BS01 rna ? GO:0000027 ... P05744 32299921
    65 6tb3:BL (2.8) BS01 rna ? GO:0003735 ... P05749 32299921
    66 6tb3:BM (2.8) BS01 rna ? GO:0000027 ... P05739 32299921
    67 6tb3:BN (2.8) BS01 rna ? GO:0002181 ... P87262 32299921
    68 6tb3:BN (2.8) BS02 ZN ? GO:0002181 ... P87262 32299921
    69 6tb3:BN (2.8) BS03 MG ? GO:0002181 ... P87262 32299921
    70 6tb3:BO (2.8) BS01 rna ? GO:0000463 ... P05737 32299921
    71 6tb3:BO (2.8) BS02 rna ? GO:0000463 ... P05737 32299921
    72 6tb3:BP (2.8) BS01 rna ? GO:0000463 ... P0CX84 32299921
    73 6tb3:BP (2.8) BS02 rna ? GO:0000463 ... P0CX84 32299921
    74 6tb3:BT (2.8) BS01 rna ? GO:0000055 ... P0CX43 32299921
    75 6tb3:BW (2.8) BS01 rna ? GO:0005634 ... Q12514 32299921
    76 6tb3:BW (2.8) BS02 rna ? GO:0005634 ... Q12514 32299921
    77 6tb3:BW (2.8) BS03 rna ? GO:0005634 ... Q12514 32299921
    78 6tb3:C (2.8) BS01 rna ? N/A Q08745 32299921
    79 6tb3:D (2.8) BS01 rna ? GO:0003735 ... P48589 32299921
    80 6tb3:E (2.8) BS01 rna ? GO:0003723 ... Q01855 32299921
    81 6tb3:F (2.8) BS01 rna ? GO:0000462 ... P0CX51 32299921
    82 6tb3:G (2.8) BS01 rna ? GO:0000028 ... P14127 32299921
    83 6tb3:H (2.8) BS01 rna ? GO:0000054 ... P0CX55 32299921
    84 6tb3:I (2.8) BS01 rna ? GO:0000028 ... P07280 32299921
    85 6tb3:J (2.8) BS01 rna ? GO:0003723 ... P38701 32299921
    86 6tb3:K (2.8) BS01 rna ? N/A Q3E792 32299921
    87 6tb3:K (2.8) BS02 rna ? N/A Q3E792 32299921
    88 6tb3:L (2.8) BS01 rna ? GO:0000028 ... Q3E7X9 32299921
    89 6tb3:M (2.8) BS01 rna ? GO:0002181 ... P41057 32299921
    90 6tb3:M (2.8) BS02 ZN ? GO:0002181 ... P41057 32299921
    91 6tb3:N (2.8) BS01 rna ? GO:0003735 ... P05759 32299921
    92 6tb3:N (2.8) BS02 ZN ? GO:0003735 ... P05759 32299921
    93 6tb3:O (2.8) BS01 rna ? GO:0001965 ... P38011 32299921
    94 6tb3:P (2.8) BS01 rna ? GO:0003735 ... P32905 32299921
    95 6tb3:Q (2.8) BS01 rna ? GO:0000462 ... P33442 32299921
    96 6tb3:Q (2.8) BS02 rna ? GO:0000462 ... P33442 32299921
    97 6tb3:R (2.8) BS01 rna ? GO:0003723 ... P25443 32299921
    98 6tb3:S (2.8) BS01 rna ? GO:0002181 ... P0CX35 32299921
    99 6tb3:S (2.8) BS02 MG ? GO:0002181 ... P0CX35 32299921
    100 6tb3:T (2.8) BS01 rna ? GO:0000462 ... P0CX37 32299921
    101 6tb3:U (2.8) BS01 rna ? GO:0002181 ... P26786 32299921
    102 6tb3:V (2.8) BS01 rna ? GO:0000462 ... A0A0J9X221 32299921
    103 6tb3:V (2.8) BS02 rna ? GO:0000462 ... A0A0J9X221 32299921
    104 6tb3:W (2.8) BS01 rna ? GO:0000462 ... O13516 32299921
    105 6tb3:X (2.8) BS01 rna ? GO:0000028 ... P0CX47 32299921
    106 6tb3:Y (2.8) BS01 rna ? GO:0000462 ... P05756 32299921
    107 6tb3:Y (2.8) BS02 rna ? GO:0000462 ... P05756 32299921
    108 6tb3:Z (2.8) BS01 rna ? GO:0000028 ... P39516 32299921
    109 6tb3:b (2.8) BS01 rna ? GO:0002181 ... P0C0W1 32299921
    110 6tb3:c (2.8) BS01 rna ? GO:0000462 ... P0CX29 32299921
    111 6tb3:d (2.8) BS01 rna ? GO:0000462 ... P0CX31 32299921
    112 6tb3:e (2.8) BS01 rna ? GO:0003735 ... P39939 32299921
    113 6tb3:f (2.8) BS01 rna ? GO:0000028 ... P35997 32299921
    114 6tb3:g (2.8) BS01 rna ? GO:0002181 ... P0CX33 32299921
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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