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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6spe:b (3.6) BS01 rna ? GO:0003735 ... A0A072ZPV8 31611393
    2 6spe:c (3.6) BS01 rna ? GO:0003676 ... A0A140S919 31611393
    3 6spe:d (3.6) BS01 rna ? GO:0003723 ... A0A072ZDF7 31611393
    4 6spe:e (3.6) BS01 rna ? GO:0003723 ... A0A241XG65 31611393
    5 6spe:f (3.6) BS01 rna ? GO:0003735 ... A0A069Q263 31611393
    6 6spe:g (3.6) BS01 rna ? GO:0000028 ... A0A2V3F2U6 31611393
    7 6spe:h (3.6) BS01 rna ? GO:0003735 ... E2RXT9 31611393
    8 6spe:i (3.6) BS01 rna ? GO:0003723 ... A0A069PXX1 31611393
    9 6spe:j (3.6) BS01 rna ? GO:0000049 ... E2RXT0 31611393
    10 6spe:k (3.6) BS01 rna ? GO:0003735 ... E2RXU4 31611393
    11 6spe:l (3.6) BS01 rna ? GO:0000049 ... A0A071L394 31611393
    12 6spe:m (3.6) BS01 rna ? GO:0000049 ... E2RXU3 31611393
    13 6spe:n (3.6) BS01 rna ? GO:0003735 ... E2RXT8 31611393
    14 6spe:o (3.6) BS01 rna ? GO:0003735 ... A0A071L3R7 31611393
    15 6spe:p (3.6) BS01 rna ? GO:0003735 ... A0A2V4FRZ2 31611393
    16 6spe:q (3.6) BS01 rna ? GO:0003735 ... E2RXT5 31611393
    17 6spe:r (3.6) BS01 rna ? GO:0003735 ... A0A2V3DLV3 31611393
    18 6spe:s (3.6) BS01 rna ? GO:0003723 ... E2RXT2 31611393
    19 6spe:t (3.6) BS01 rna ? GO:0003723 ... A0A072ZDZ9 31611393
    20 6spe:u (3.6) BS01 rna ? GO:0003735 ... A0A069QC99 31611393
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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