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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6spd:2 (3.28) BS01 rna ? GO:0003735 ... A0A069QB25 31611393
    2 6spd:3 (3.28) BS01 rna ? GO:0003735 ... A0A140SG33 31611393
    3 6spd:4 (3.28) BS01 rna ? GO:0003735 ... A0A087L9L7 31611393
    4 6spd:5 (3.28) BS01 rna ? GO:0003735 ... A0A069QC44 31611393
    5 6spd:6 (3.28) BS01 rna ? GO:0003735 ... E2RXU2 31611393
    6 6spd:C (3.28) BS01 rna ? GO:0002181 ... A0A241XHA2 31611393
    7 6spd:D (3.28) BS01 rna ? GO:0003735 ... A0A072ZBZ2 31611393
    8 6spd:E (3.28) BS01 rna ? GO:0003735 ... A0A241XH26 31611393
    9 6spd:F (3.28) BS01 rna ? GO:0000049 ... A0A072ZMU2 31611393
    10 6spd:F (3.28) BS02 rna ? GO:0000049 ... A0A072ZMU2 31611393
    11 6spd:G (3.28) BS01 rna ? GO:0002181 ... A0A2V3F3S9 31611393
    12 6spd:H (3.28) BS01 rna ? GO:0003735 ... A0A072ZKF0 31611393
    13 6spd:I (3.28) BS01 rna ? GO:0003735 ... A0A2V3GYK0 31611393
    14 6spd:J (3.28) BS01 rna ? GO:0003729 ... A0A071L356 31611393
    15 6spd:K (3.28) BS01 rna ? GO:0003735 ... E2RXT6 31611393
    16 6spd:L (3.28) BS01 rna ? GO:0003735 ... A0A2V3D5Z8 31611393
    17 6spd:M (3.28) BS01 rna ? GO:0000049 ... A0A069QEB6 31611393
    18 6spd:N (3.28) BS01 rna ? GO:0003735 ... A0A072ZCA1 31611393
    19 6spd:O (3.28) BS01 rna ? GO:0003735 ... E2RXU0 31611393
    20 6spd:O (3.28) BS02 rna ? GO:0003735 ... E2RXU0 31611393
    21 6spd:P (3.28) BS01 rna ? GO:0003735 ... A0A263PZC6 31611393
    22 6spd:Q (3.28) BS01 rna ? GO:0000027 ... A0A069QEE3 31611393
    23 6spd:R (3.28) BS01 rna ? GO:0003723 ... A0A072ZDZ0 31611393
    24 6spd:S (3.28) BS01 rna N/A GO:0003735 ... N/A 31611393
    25 6spd:T (3.28) BS01 rna ? GO:0000027 ... E2RXT1 31611393
    26 6spd:U (3.28) BS01 rna ? GO:0003723 ... E2RXT7 31611393
    27 6spd:V (3.28) BS01 rna ? GO:0003723 ... A0A072ZBM5 31611393
    28 6spd:V (3.28) BS02 rna ? GO:0003723 ... A0A072ZBM5 31611393
    29 6spd:W (3.28) BS01 rna ? GO:0003735 ... A0A071LFT4 31611393
    30 6spd:W (3.28) BS02 rna ? GO:0003735 ... A0A071LFT4 31611393
    31 6spd:X (3.28) BS01 rna ? GO:0003735 ... A0A072ZIQ9 31611393
    32 6spd:Y (3.28) BS01 rna N/A GO:0003735 ... N/A 31611393
    33 6spd:Z (3.28) BS01 rna ? GO:0003735 ... E2RXU1 31611393
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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