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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6skg:Ab (2.65) BS01 rna ? GO:0000028 ... Q5JJD2 32555463
    2 6skg:Ac (2.65) BS01 rna ? GO:0003676 ... Q5JDH5 32555463
    3 6skg:Ad (2.65) BS01 rna ? GO:0003735 ... Q5JGM4 32555463
    4 6skg:Ae (2.65) BS01 rna ? GO:0003723 ... Q5JJF2 32555463
    5 6skg:Af (2.65) BS01 rna ? GO:0003723 ... Q5JJG0 32555463
    6 6skg:Ag (2.65) BS01 rna ? GO:0003723 ... Q5JJG8 32555463
    7 6skg:Ag (2.65) BS02 ZN ? GO:0003723 ... Q5JJG8 32555463
    8 6skg:Ah (2.65) BS01 rna ? GO:0003735 ... Q5JDK8 32555463
    9 6skg:Ai (2.65) BS01 rna ? GO:0000028 ... Q5JE04 32555463
    10 6skg:Aj (2.65) BS01 rna ? GO:0003735 ... Q5JJG3 32555463
    11 6skg:Ak (2.65) BS01 rna ? GO:0000462 ... Q5JGF3 32555463
    12 6skg:Al (2.65) BS01 rna ? GO:0000462 ... Q5JJE2 32555463
    13 6skg:Am (2.65) BS01 rna ? GO:0000049 ... Q5JFZ5 32555463
    14 6skg:An (2.65) BS01 rna ? GO:0003735 ... Q5JJF3 32555463
    15 6skg:Ao (2.65) BS01 rna ? GO:0003735 ... Q5JE20 32555463
    16 6skg:Ap (2.65) BS01 rna ? GO:0003676 ... Q5JJF1 32555463
    17 6skg:Aq (2.65) BS01 rna ? GO:0003735 ... Q5JGJ4 32555463
    18 6skg:Aq (2.65) BS02 rna ? GO:0003735 ... Q5JGJ4 32555463
    19 6skg:Ar (2.65) BS01 rna ? GO:0002181 ... Q5JJG2 32555463
    20 6skg:Ar (2.65) BS02 ZN ? GO:0002181 ... Q5JJG2 32555463
    21 6skg:As (2.65) BS01 rna ? GO:0003735 ... Q5JDH9 32555463
    22 6skg:As (2.65) BS02 ZN ? GO:0003735 ... Q5JDH9 32555463
    23 6skg:At (2.65) BS01 rna ? GO:0003735 ... Q5JDC7 32555463
    24 6skg:Au (2.65) BS01 rna ? GO:0000028 ... Q5JDH3 32555463
    25 6skg:Av (2.65) BS01 rna ? GO:0000028 ... Q5JGN5 32555463
    26 6skg:Aw (2.65) BS01 rna ? GO:0003735 ... Q5JIY8 32555463
    27 6skg:Ax (2.65) BS01 rna ? GO:0000028 ... Q5JE50 32555463
    28 6skg:Ax (2.65) BS02 ZN ? GO:0000028 ... Q5JE50 32555463
    29 6skg:Ay (2.65) BS01 rna ? GO:0000028 ... Q5JGR4 32555463
    30 6skg:Az (2.65) BS01 ZN ? N/A Q5JFE2 32555463
    31 6skg:Az (2.65) BS02 ZN ? N/A Q5JFE2 32555463
    32 6skg:BC (2.65) BS01 rna ? GO:0002181 ... Q5JDH2 32555463
    33 6skg:BD (2.65) BS01 rna ? GO:0003723 ... Q5JDJ0 32555463
    34 6skg:BE (2.65) BS01 rna ? GO:0003723 ... Q5JDI0 32555463
    35 6skg:BF (2.65) BS01 rna ? GO:0000049 ... Q5JJG1 32555463
    36 6skg:BF (2.65) BS02 rna ? GO:0000049 ... Q5JJG1 32555463
    37 6skg:BG (2.65) BS01 rna ? GO:0002181 ... Q5JJG4 32555463
    38 6skg:BH (2.65) BS01 rna ? GO:0001682 ... Q5JGR3 32555463
    39 6skg:BI (2.65) BS01 rna ? GO:0001682 ... Q5JGR3 32555463
    40 6skg:BJ (2.65) BS01 rna ? GO:0000027 ... Q5JDI6 32555463
    41 6skg:BJ (2.65) BS02 rna ? GO:0000027 ... Q5JDI6 32555463
    42 6skg:BK (2.65) BS01 rna ? GO:0003729 ... Q5JJF6 32555463
    43 6skg:BL (2.65) BS01 rna ? GO:0003735 ... Q5JJF8 32555463
    44 6skg:BL (2.65) BS02 rna ? GO:0003735 ... Q5JJF8 32555463
    45 6skg:BM (2.65) BS01 rna ? GO:0003723 ... Q5JJE4 32555463
    46 6skg:BN (2.65) BS01 rna ? GO:0003723 ... Q5JJE4 32555463
    47 6skg:BO (2.65) BS01 rna ? GO:0003735 ... Q5JJH0 32555463
    48 6skg:BP (2.65) BS01 rna ? GO:0002181 ... Q5JH43 32555463
    49 6skg:BQ (2.65) BS01 rna ? GO:0000027 ... Q5JJG7 32555463
    50 6skg:BQ (2.65) BS02 rna ? GO:0000027 ... Q5JJG7 32555463
    51 6skg:BR (2.65) BS01 rna ? GO:0003723 ... Q5JJF5 32555463
    52 6skg:BS (2.65) BS01 rna ? GO:0003723 ... Q5JJG6 32555463
    53 6skg:BT (2.65) BS01 rna ? GO:0003735 ... Q5JGT3 32555463
    54 6skg:BU (2.65) BS01 rna ? GO:0003735 ... Q5JI51 32555463
    55 6skg:BV (2.65) BS01 rna ? GO:0002181 ... Q5JDH4 32555463
    56 6skg:BW (2.65) BS01 rna ? GO:0000027 ... Q5JDH1 32555463
    57 6skg:BX (2.65) BS01 rna ? GO:0002181 ... Q5JJF9 32555463
    58 6skg:BY (2.65) BS01 rna ? GO:0003735 ... Q5JGR5 32555463
    59 6skg:BY (2.65) BS02 ZN ? GO:0003735 ... Q5JGR5 32555463
    60 6skg:BZ (2.65) BS01 rna ? GO:0003735 ... Q5JDH6 32555463
    61 6skg:Ba (2.65) BS01 rna ? GO:0000463 ... Q5JJG9 32555463
    62 6skg:Ba (2.65) BS02 rna ? GO:0000463 ... Q5JJG9 32555463
    63 6skg:Bb (2.65) BS01 rna ? GO:0003723 ... Q5JE35 32555463
    64 6skg:Bc (2.65) BS01 rna ? GO:0002181 ... Q5JGT5 32555463
    65 6skg:Bd (2.65) BS01 rna ? GO:0003735 ... Q5JJG5 32555463
    66 6skg:Be (2.65) BS01 rna ? GO:0003735 ... Q5JJF7 32555463
    67 6skg:Be (2.65) BS02 ZN ? GO:0003735 ... Q5JJF7 32555463
    68 6skg:Bf (2.65) BS01 rna N/A GO:0003735 ... N/A 32555463
    69 6skg:Bg (2.65) BS01 rna ? GO:0003723 ... Q5JDM6 32555463
    70 6skg:Bg (2.65) BS02 ZN ? GO:0003723 ... Q5JDM6 32555463
    71 6skg:Bh (2.65) BS01 rna ? GO:0003723 ... Q5JIE1 32555463
    72 6skg:Bh (2.65) BS02 ZN ? GO:0003723 ... Q5JIE1 32555463
    73 6skg:Bi (2.65) BS01 rna ? GO:0003735 ... Q5JGT6 32555463
    74 6skg:Bj (2.65) BS01 rna ? GO:0003735 ... Q5JJD3 32555463
    75 6skg:Bj (2.65) BS02 ZN ? GO:0003735 ... Q5JJD3 32555463
    76 6skg:Bk (2.65) BS01 rna ? GO:0005840 ... Q5JEV0 32555463
    77 6skg:Bl (2.65) BS01 rna ? GO:0003735 ... Q5JE51 32555463
    78 6skg:Bl (2.65) BS02 ZN ? GO:0003735 ... Q5JE51 32555463
    79 6skg:Bm (2.65) BS01 rna ? GO:0003735 ... Q5JDC7 32555463
    80 6skg:Bn (2.65) BS01 rna ? GO:0003735 ... Q5JIY8 32555463
    81 6skg:Bo (2.65) BS01 rna ? N/A Q5JFH3 32555463
    82 6skg:Bo (2.65) BS02 ZN ? N/A Q5JFH3 32555463
    83 6skg:Bp (2.65) BS01 rna ? GO:0042254 ... Q5JIV0 32555463
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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