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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6shb:A (3.07) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    2 6shb:B (3.07) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    3 6shb:C (3.07) BS01 rna ? GO:0005737 ... F0NDX5 32730741
    4 6shb:D (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    5 6shb:D (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    6 6shb:E (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    7 6shb:E (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    8 6shb:F (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    9 6shb:F (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    10 6shb:G (3.07) BS01 rna ? GO:0051607 ... F0NDX6 32730741
    11 6shb:G (3.07) BS02 rna ? GO:0051607 ... F0NDX6 32730741
    12 6shb:H (3.07) BS01 rna ? N/A F0NDX1 32730741
    13 6shb:H (3.07) BS02 rna ? N/A F0NDX1 32730741
    14 6shb:I (3.07) BS01 rna ? GO:0051607 ... F0NDX3 32730741
    15 6shb:I (3.07) BS02 rna ? GO:0051607 ... F0NDX3 32730741
    16 6shb:J (3.07) BS01 rna ? GO:0051607 ... F0NDX4 32730741
    17 6shb:J (3.07) BS02 rna ? GO:0051607 ... F0NDX4 32730741
    18 6shb:K (3.07) BS01 rna ? GO:0016020 ... F0NDX2 32730741
    19 6shb:K (3.07) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    20 6shb:K (3.07) BS03 ANP ? GO:0016020 ... F0NDX2 32730741
    21 6shb:K (3.07) BS04 ANP ? GO:0016020 ... F0NDX2 32730741
    22 6shb:K (3.07) BS05 MN ? GO:0016020 ... F0NDX2 32730741
    23 6shb:W (3.07) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    24 6shb:t (3.07) BS01 rna ? GO:0051607 ... F0NDX7 32730741
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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