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BioLiP Library
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6sga:CE (3.1) BS01 peptide N/A GO:0003735 ... N/A 31515389
    2 6sga:CE (3.1) BS02 rna N/A GO:0003735 ... N/A 31515389
    3 6sga:CF (3.1) BS01 peptide ? GO:0005739 ... Q38BW5 31515389
    4 6sga:CF (3.1) BS02 rna ? GO:0005739 ... Q38BW5 31515389
    5 6sga:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 31515389
    6 6sga:CK (3.1) BS01 rna ? GO:0003735 ... Q389T7 31515389
    7 6sga:CO (3.1) BS01 rna ? GO:0005739 ... Q4GZ99 31515389
    8 6sga:CP (3.1) BS01 rna ? GO:0005737 ... Q384N9 31515389
    9 6sga:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 31515389
    10 6sga:CR (3.1) BS01 rna N/A N/A N/A 31515389
    11 6sga:Ca (3.1) BS01 peptide ? GO:0005739 ... Q38DR3 31515389
    12 6sga:Ca (3.1) BS02 rna ? GO:0005739 ... Q38DR3 31515389
    13 6sga:Cb (3.1) BS01 peptide N/A N/A N/A 31515389
    14 6sga:Cd (3.1) BS01 rna ? GO:0005739 ... Q38DK6 31515389
    15 6sga:Cj (3.1) BS01 rna ? GO:0005739 ... Q57UK0 31515389
    16 6sga:Cp (3.1) BS01 rna ? GO:0005739 ... Q389L3 31515389
    17 6sga:DD (3.1) BS01 rna N/A N/A N/A 31515389
    18 6sga:DL (3.1) BS01 rna N/A N/A N/A 31515389
    19 6sga:DP (3.1) BS01 rna N/A N/A N/A 31515389
    20 6sga:DR (3.1) BS01 rna N/A N/A N/A 31515389
    21 6sga:DU (3.1) BS01 rna N/A N/A N/A 31515389
    22 6sga:F1 (3.1) BS01 rna ? GO:0003735 ... Q385R2 31515389
    23 6sga:F2 (3.1) BS01 rna N/A N/A N/A 31515389
    24 6sga:F3 (3.1) BS01 peptide ? GO:0005739 ... Q38E61 31515389
    25 6sga:F3 (3.1) BS02 rna ? GO:0005739 ... Q38E61 31515389
    26 6sga:F5 (3.1) BS01 peptide N/A N/A N/A 31515389
    27 6sga:F6 (3.1) BS01 peptide ? GO:0005739 ... Q38FQ8 31515389
    28 6sga:F7 (3.1) BS01 peptide ? GO:0003729 ... Q57UW6 31515389
    29 6sga:F7 (3.1) BS02 peptide ? GO:0003729 ... Q57UW6 31515389
    30 6sga:F7 (3.1) BS03 rna ? GO:0003729 ... Q57UW6 31515389
    31 6sga:F8 (3.1) BS01 rna N/A N/A N/A 31515389
    32 6sga:F9 (3.1) BS01 rna N/A N/A N/A 31515389
    33 6sga:FA (3.1) BS01 peptide ? GO:0005739 ... Q386U1 31515389
    34 6sga:FA (3.1) BS02 peptide ? GO:0005739 ... Q386U1 31515389
    35 6sga:FA (3.1) BS03 peptide ? GO:0005739 ... Q386U1 31515389
    36 6sga:FB (3.1) BS01 rna N/A GO:0001522 ... N/A 31515389
    37 6sga:FC (3.1) BS01 peptide N/A GO:0001522 ... N/A 31515389
    38 6sga:FE (3.1) BS01 rna N/A N/A N/A 31515389
    39 6sga:FJ (3.1) BS01 peptide N/A N/A N/A 31515389
    40 6sga:FJ (3.1) BS02 rna N/A N/A N/A 31515389
    41 6sga:FM (3.1) BS01 peptide N/A GO:0050661 ... N/A 31515389
    42 6sga:FO (3.1) BS01 peptide ? GO:0005737 ... Q389F9 31515389
    43 6sga:FO (3.1) BS02 peptide ? GO:0005737 ... Q389F9 31515389
    44 6sga:FO (3.1) BS03 peptide ? GO:0005737 ... Q389F9 31515389
    45 6sga:FO (3.1) BS04 peptide ? GO:0005737 ... Q389F9 31515389
    46 6sga:FO (3.1) BS05 rna ? GO:0005737 ... Q389F9 31515389
    47 6sga:FP (3.1) BS01 peptide N/A N/A N/A 31515389
    48 6sga:FP (3.1) BS02 MG N/A N/A N/A 31515389
    49 6sga:FQ (3.1) BS01 rna ? GO:0005249 ... Q387P8 31515389
    50 6sga:FR (3.1) BS01 rna ? GO:0005249 ... Q387P8 31515389
    51 6sga:FS (3.1) BS01 peptide ? GO:0005249 ... Q387P8 31515389
    52 6sga:FU (3.1) BS01 rna ? GO:0005249 ... Q387P8 31515389
    53 6sga:FW (3.1) BS01 rna ? GO:0005739 ... Q38FI3 31515389
    54 6sga:FW (3.1) BS02 MG ? GO:0005739 ... Q38FI3 31515389
    55 6sga:FX (3.1) BS01 peptide ? GO:0005737 ... Q57YK5 31515389
    56 6sga:FX (3.1) BS02 peptide ? GO:0005737 ... Q57YK5 31515389
    57 6sga:FY (3.1) BS01 rna N/A N/A N/A 31515389
    58 6sga:Fa (3.1) BS01 rna ? GO:0005739 ... Q57VU7 31515389
    59 6sga:Fb (3.1) BS01 PM8 ? GO:0005739 ... Q581U4 31515389
    60 6sga:Fc (3.1) BS01 PM8 ? GO:0000035 ... Q57WW9 31515389
    61 6sga:Fd (3.1) BS01 rna ? GO:0005739 ... Q581T4 31515389
    62 6sga:Fd (3.1) BS02 ZN ? GO:0005739 ... Q581T4 31515389
    63 6sga:UY (3.1) BS01 rna N/A N/A N/A 31515389
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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