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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6s0x:1 (2.425) BS01 rna ? GO:0003735 ... A0A077V2P0 31391518
    2 6s0x:2 (2.425) BS01 rna ? GO:0003735 ... W8TQ59 31391518
    3 6s0x:3 (2.425) BS01 rna ? GO:0003735 ... A0A077UL47 31391518
    4 6s0x:4 (2.425) BS01 rna ? GO:0003735 ... A0A077UGV8 31391518
    5 6s0x:C (2.425) BS01 rna ? GO:0002181 ... B3VKN3 31391518
    6 6s0x:D (2.425) BS01 rna ? GO:0003735 ... W8U3W0 31391518
    7 6s0x:E (2.425) BS01 rna ? GO:0003735 ... W8TRC7 31391518
    8 6s0x:F (2.425) BS01 rna ? GO:0000049 ... W8TUC3 31391518
    9 6s0x:F (2.425) BS02 rna ? GO:0000049 ... W8TUC3 31391518
    10 6s0x:G (2.425) BS01 rna ? GO:0002181 ... W8U3X2 31391518
    11 6s0x:H (2.425) BS01 rna ? GO:0003729 ... W8TUE6 31391518
    12 6s0x:I (2.425) BS01 rna ? GO:0003735 ... A0A077UUA0 31391518
    13 6s0x:I (2.425) BS02 rna ? GO:0003735 ... A0A077UUA0 31391518
    14 6s0x:J (2.425) BS01 rna ? GO:0003735 ... A0A077UGA7 31391518
    15 6s0x:K (2.425) BS01 rna ? GO:0000049 ... A0A077V4G0 31391518
    16 6s0x:L (2.425) BS01 rna ? GO:0003735 ... A0A077UG91 31391518
    17 6s0x:M (2.425) BS01 rna ? GO:0003735 ... W8TRE0 31391518
    18 6s0x:M (2.425) BS02 rna ? GO:0003735 ... W8TRE0 31391518
    19 6s0x:N (2.425) BS01 rna ? GO:0003735 ... A0A077UVB6 31391518
    20 6s0x:O (2.425) BS01 rna ? GO:0000027 ... A0A077VMP6 31391518
    21 6s0x:P (2.425) BS01 rna ? GO:0003723 ... D7URR3 31391518
    22 6s0x:Q (2.425) BS01 rna ? GO:0003735 ... A0A077UKF9 31391518
    23 6s0x:R (2.425) BS01 rna ? GO:0000027 ... W8TUB4 31391518
    24 6s0x:S (2.425) BS01 rna ? GO:0003723 ... W8TRD5 31391518
    25 6s0x:T (2.425) BS01 rna ? GO:0003735 ... A0A133Q8Z9 31391518
    26 6s0x:U (2.425) BS01 rna ? GO:0003735 ... A0A077ULC5 31391518
    27 6s0x:U (2.425) BS02 rna ? GO:0003735 ... A0A077ULC5 31391518
    28 6s0x:V (2.425) BS01 rna ? GO:0003735 ... A0A077URJ8 31391518
    29 6s0x:W (2.425) BS01 rna ? GO:0003735 ... A0A077W1J5 31391518
    30 6s0x:X (2.425) BS01 rna ? GO:0003735 ... W8UVN7 31391518
    31 6s0x:X (2.425) BS02 rna ? GO:0003735 ... W8UVN7 31391518
    32 6s0x:Y (2.425) BS01 rna ? GO:0003735 ... A0A380EL30 31391518
    33 6s0x:Z (2.425) BS01 rna N/A GO:0003735 ... N/A 31391518
    34 6s0x:b (2.425) BS01 rna ? GO:0003735 ... A0A2X2M020 31391518
    35 6s0x:c (2.425) BS01 rna ? GO:0003676 ... A0A077UU26 31391518
    36 6s0x:d (2.425) BS01 rna ? GO:0003723 ... W8TVK2 31391518
    37 6s0x:e (2.425) BS01 rna ? GO:0003723 ... W8TUC9 31391518
    38 6s0x:f (2.425) BS01 rna ? GO:0003735 ... W8TPC6 31391518
    39 6s0x:g (2.425) BS01 rna ? GO:0000028 ... A0A077VHU6 31391518
    40 6s0x:h (2.425) BS01 rna ? GO:0003735 ... W8U8T8 31391518
    41 6s0x:i (2.425) BS01 rna ? GO:0003723 ... A0A1Q4GY48 31391518
    42 6s0x:j (2.425) BS01 rna ? GO:0000049 ... A0A0H2K0A0 31391518
    43 6s0x:k (2.425) BS01 rna ? GO:0003735 ... A0A077UKD6 31391518
    44 6s0x:l (2.425) BS01 rna ? GO:0003735 ... A0A133PZQ5 31391518
    45 6s0x:m (2.425) BS01 rna ? GO:0003676 ... W8U8U6 31391518
    46 6s0x:n (2.425) BS01 rna ? GO:0003735 ... A0A077UGW7 31391518
    47 6s0x:o (2.425) BS01 rna ? GO:0003735 ... W8U6H8 31391518
    48 6s0x:p (2.425) BS01 rna ? GO:0003735 ... W8U6K4 31391518
    49 6s0x:q (2.425) BS01 rna ? GO:0003735 ... A0A077VLD5 31391518
    50 6s0x:r (2.425) BS01 rna ? GO:0003735 ... A0A077UZF4 31391518
    51 6s0x:s (2.425) BS01 rna ? GO:0003723 ... A0A133PYC3 31391518
    52 6s0x:t (2.425) BS01 rna ? GO:0003723 ... W8UXC3 31391518
    53 6s0x:u (2.425) BS01 rna N/A GO:0003735 ... N/A 31391518
    54 6s0x:v (2.425) BS01 rna ? GO:0044238 ... D2Z097 31391518
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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