Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6s05:B (3.9) BS01 rna ? GO:0002181 ... P0CX45 31115337
    2 6s05:C (3.9) BS01 rna ? GO:0000027 ... P14126 31115337
    3 6s05:D (3.9) BS01 rna ? GO:0002181 ... P10664 31115337
    4 6s05:D (3.9) BS02 rna ? GO:0002181 ... P10664 31115337
    5 6s05:E (3.9) BS01 rna ? GO:0000027 ... P0C0W9 31115337
    6 6s05:E (3.9) BS02 rna ? GO:0000027 ... P0C0W9 31115337
    7 6s05:F (3.9) BS01 rna ? GO:0002181 ... P05738 31115337
    8 6s05:G (3.9) BS01 rna ? GO:0000027 ... Q02326 31115337
    9 6s05:H (3.9) BS01 rna ? GO:0000470 ... P17076 31115337
    10 6s05:H (3.9) BS02 rna ? GO:0000470 ... P17076 31115337
    11 6s05:J (3.9) BS01 rna ? GO:0000470 ... P26785 31115337
    12 6s05:K (3.9) BS01 rna ? GO:0002181 ... Q12690 31115337
    13 6s05:K (3.9) BS02 rna ? GO:0002181 ... Q12690 31115337
    14 6s05:L (3.9) BS01 rna ? GO:0002181 ... P0CX41 31115337
    15 6s05:M (3.9) BS01 rna ? GO:0000027 ... P36105 31115337
    16 6s05:N (3.9) BS01 rna ? GO:0002181 ... P02406 31115337
    17 6s05:O (3.9) BS01 rna ? GO:0002181 ... P05748 31115337
    18 6s05:O (3.9) BS02 rna ? GO:0002181 ... P05748 31115337
    19 6s05:P (3.9) BS01 rna ? GO:0000027 ... P26321 31115337
    20 6s05:P (3.9) BS02 rna ? GO:0000027 ... P26321 31115337
    21 6s05:Q (3.9) BS01 rna ? GO:0002181 ... P0CX49 31115337
    22 6s05:R (3.9) BS01 rna ? GO:0002181 ... P0CX82 31115337
    23 6s05:S (3.9) BS01 rna ? GO:0002181 ... P0CX23 31115337
    24 6s05:S (3.9) BS02 rna ? GO:0002181 ... P0CX23 31115337
    25 6s05:T (3.9) BS01 rna ? GO:0002181 ... Q02753 31115337
    26 6s05:T (3.9) BS02 rna ? GO:0002181 ... Q02753 31115337
    27 6s05:U (3.9) BS01 rna ? GO:0000448 ... P05740 31115337
    28 6s05:U (3.9) BS02 rna ? GO:0000448 ... P05740 31115337
    29 6s05:V (3.9) BS01 rna ? GO:0002181 ... P05749 31115337
    30 6s05:W (3.9) BS01 rna ? GO:0000027 ... P04456 31115337
    31 6s05:W (3.9) BS02 rna ? GO:0000027 ... P04456 31115337
    32 6s05:X (3.9) BS01 rna ? GO:0002181 ... P05743 31115337
    33 6s05:X (3.9) BS02 rna ? GO:0002181 ... P05743 31115337
    34 6s05:Y (3.9) BS01 rna ? GO:0002181 ... P0C2H6 31115337
    35 6s05:Z (3.9) BS01 rna ? GO:0000463 ... P0CX84 31115337
    36 6s05:Z (3.9) BS02 rna ? GO:0000463 ... P0CX84 31115337
    37 6s05:a (3.9) BS01 rna ? GO:0002181 ... P05747 31115337
    38 6s05:b (3.9) BS01 rna ? GO:0000463 ... P05737 31115337
    39 6s05:b (3.9) BS02 rna ? GO:0000463 ... P05737 31115337
    40 6s05:c (3.9) BS01 rna ? GO:0002181 ... P14120 31115337
    41 6s05:d (3.9) BS01 rna ? GO:0002181 ... P0C2H8 31115337
    42 6s05:e (3.9) BS01 rna ? GO:0002181 ... P38061 31115337
    43 6s05:f (3.9) BS01 rna ? GO:0000027 ... P05744 31115337
    44 6s05:g (3.9) BS01 rna ? GO:0002181 ... P87262 31115337
    45 6s05:g (3.9) BS02 ZN ? GO:0002181 ... P87262 31115337
    46 6s05:h (3.9) BS01 rna ? GO:0002181 ... P05745 31115337
    47 6s05:i (3.9) BS01 rna ? GO:0000448 ... P49166 31115337
    48 6s05:i (3.9) BS02 rna ? GO:0000448 ... P49166 31115337
    49 6s05:i (3.9) BS03 ZN ? GO:0000448 ... P49166 31115337
    50 6s05:j (3.9) BS01 rna ? GO:0002181 ... P49167 31115337
    51 6s05:k (3.9) BS01 rna ? GO:0002181 ... P04650 31115337
    52 6s05:k (3.9) BS02 rna ? GO:0002181 ... P04650 31115337
    53 6s05:l (3.9) BS01 rna ? GO:0002181 ... P0CX27 31115337
    54 6s05:l (3.9) BS02 ZN ? GO:0002181 ... P0CX27 31115337
    55 6s05:m (3.9) BS01 rna ? GO:0002181 ... P0CX25 31115337
    56 6s05:m (3.9) BS02 ZN ? GO:0002181 ... P0CX25 31115337
    57 6s05:n (3.9) BS01 rna ? GO:0000054 ... Q12522 31115337
    58 6s05:o (3.9) BS01 rna 3.6.1.- GO:0000027 ... P53145 31115337
    59 6s05:p (3.9) BS01 rna N/A N/A N/A 31115337
    60 6s05:s (3.9) BS01 rna 3.1.3.48 GO:0000027 ... Q02256 31115337
    61 6s05:s (3.9) BS02 ZN 3.1.3.48 GO:0000027 ... Q02256 31115337
    62 6s05:v (3.9) BS01 rna ? GO:0002181 ... P04449 31115337
    63 6s05:w (3.9) BS01 rna ? GO:0000055 ... P38861 31115337
    64 6s05:w (3.9) BS02 ZN ? GO:0000055 ... P38861 31115337
    65 6s05:z (3.9) BS01 rna ? GO:0005737 ... Q06709 31115337
    66 6s05:z (3.9) BS02 rna ? GO:0005737 ... Q06709 31115337
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218