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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rlp:A (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    2 6rlp:B (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    3 6rlp:C (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    4 6rlp:D (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    5 6rlp:E (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    6 6rlp:E (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    7 6rlp:E (2.3) BS03 rna ? GO:0005198 ... P69687 31205015
    8 6rlp:F (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    9 6rlp:G (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    10 6rlp:H (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    11 6rlp:H (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    12 6rlp:H (2.3) BS03 rna ? GO:0005198 ... P69687 31205015
    13 6rlp:I (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    14 6rlp:I (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    15 6rlp:I (2.3) BS03 rna ? GO:0005198 ... P69687 31205015
    16 6rlp:J (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    17 6rlp:K (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    18 6rlp:L (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    19 6rlp:M (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    20 6rlp:N (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    21 6rlp:N (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    22 6rlp:O (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    23 6rlp:O (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    24 6rlp:O (2.3) BS03 rna ? GO:0005198 ... P69687 31205015
    25 6rlp:P (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    26 6rlp:Q (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    27 6rlp:S (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    28 6rlp:T (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    29 6rlp:T (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    30 6rlp:T (2.3) BS03 rna ? GO:0005198 ... P69687 31205015
    31 6rlp:U (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    32 6rlp:V (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    33 6rlp:W (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    34 6rlp:W (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    35 6rlp:W (2.3) BS03 rna ? GO:0005198 ... P69687 31205015
    36 6rlp:X (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    37 6rlp:X (2.3) BS02 rna ? GO:0005198 ... P69687 31205015
    38 6rlp:X (2.3) BS03 rna ? GO:0005198 ... P69687 31205015
    39 6rlp:Y (2.3) BS01 rna ? GO:0005198 ... P69687 31205015
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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