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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rkc:A (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    2 6rkc:A (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    3 6rkc:A (2.56) BS03 SAM N/A GO:0004478 ... N/A 31520601
    4 6rkc:A (2.56) BS04 PPK N/A GO:0004478 ... N/A 31520601
    5 6rkc:A (2.56) BS05 SAM N/A GO:0004478 ... N/A 31520601
    6 6rkc:A (2.56) BS06 SAM N/A GO:0004478 ... N/A 31520601
    7 6rkc:B (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    8 6rkc:B (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    9 6rkc:B (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    10 6rkc:B (2.56) BS04 SAM N/A GO:0004478 ... N/A 31520601
    11 6rkc:B (2.56) BS05 SAM N/A GO:0004478 ... N/A 31520601
    12 6rkc:B (2.56) BS06 SAM N/A GO:0004478 ... N/A 31520601
    13 6rkc:C (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    14 6rkc:C (2.56) BS02 SAM N/A GO:0004478 ... N/A 31520601
    15 6rkc:C (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    16 6rkc:C (2.56) BS04 SAM N/A GO:0004478 ... N/A 31520601
    17 6rkc:C (2.56) BS05 PPK N/A GO:0004478 ... N/A 31520601
    18 6rkc:C (2.56) BS06 SAM N/A GO:0004478 ... N/A 31520601
    19 6rkc:D (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    20 6rkc:D (2.56) BS02 SAM N/A GO:0004478 ... N/A 31520601
    21 6rkc:D (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    22 6rkc:D (2.56) BS04 MG N/A GO:0004478 ... N/A 31520601
    23 6rkc:D (2.56) BS05 PPK N/A GO:0004478 ... N/A 31520601
    24 6rkc:D (2.56) BS06 SAM N/A GO:0004478 ... N/A 31520601
    25 6rkc:D (2.56) BS07 SAM N/A GO:0004478 ... N/A 31520601
    26 6rkc:E (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    27 6rkc:E (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    28 6rkc:E (2.56) BS03 SAM N/A GO:0004478 ... N/A 31520601
    29 6rkc:E (2.56) BS04 PPK N/A GO:0004478 ... N/A 31520601
    30 6rkc:E (2.56) BS05 SAM N/A GO:0004478 ... N/A 31520601
    31 6rkc:E (2.56) BS06 SAM N/A GO:0004478 ... N/A 31520601
    32 6rkc:F (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    33 6rkc:F (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    34 6rkc:F (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    35 6rkc:F (2.56) BS04 SAM N/A GO:0004478 ... N/A 31520601
    36 6rkc:F (2.56) BS05 SAM N/A GO:0004478 ... N/A 31520601
    37 6rkc:F (2.56) BS06 SAM N/A GO:0004478 ... N/A 31520601
    38 6rkc:G (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    39 6rkc:G (2.56) BS02 SAM N/A GO:0004478 ... N/A 31520601
    40 6rkc:G (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    41 6rkc:G (2.56) BS04 SAM N/A GO:0004478 ... N/A 31520601
    42 6rkc:G (2.56) BS05 PPK N/A GO:0004478 ... N/A 31520601
    43 6rkc:G (2.56) BS06 SAM N/A GO:0004478 ... N/A 31520601
    44 6rkc:H (2.56) BS01 SAM N/A GO:0004478 ... N/A 31520601
    45 6rkc:H (2.56) BS02 PPK N/A GO:0004478 ... N/A 31520601
    46 6rkc:H (2.56) BS03 PPK N/A GO:0004478 ... N/A 31520601
    47 6rkc:H (2.56) BS04 SAM N/A GO:0004478 ... N/A 31520601
    48 6rkc:H (2.56) BS05 SAM N/A GO:0004478 ... N/A 31520601
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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