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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6qw6:41 (2.92) BS01 rna ? GO:0000243 ... P62314 30975767
    2 6qw6:42 (2.92) BS01 rna ? GO:0000245 ... P62316 30975767
    3 6qw6:43 (2.92) BS01 rna ? GO:0000243 ... P62318 30975767
    4 6qw6:4A (2.92) BS01 rna ? GO:0000244 ... O43395 30975767
    5 6qw6:4A (2.92) BS02 rna ? GO:0000244 ... O43395 30975767
    6 6qw6:4C (2.92) BS01 rna ? GO:0000244 ... Q8WWY3 30975767
    7 6qw6:4C (2.92) BS02 rna ? GO:0000244 ... Q8WWY3 30975767
    8 6qw6:4D (2.92) BS01 rna ? GO:0000398 ... P55769 30975767
    9 6qw6:4D (2.92) BS02 rna ? GO:0000398 ... P55769 30975767
    10 6qw6:4b (2.92) BS01 rna ? GO:0000387 ... P14678 30975767
    11 6qw6:4e (2.92) BS01 rna ? GO:0000245 ... P62304 30975767
    12 6qw6:4f (2.92) BS01 rna ? GO:0000387 ... P62306 30975767
    13 6qw6:4g (2.92) BS01 rna ? GO:0000245 ... P62308 30975767
    14 6qw6:51 (2.92) BS01 rna ? GO:0000243 ... P62314 30975767
    15 6qw6:52 (2.92) BS01 rna ? GO:0000245 ... P62316 30975767
    16 6qw6:53 (2.92) BS01 rna ? GO:0000243 ... P62318 30975767
    17 6qw6:5A (2.92) BS01 rna ? GO:0000244 ... Q6P2Q9 30975767
    18 6qw6:5A (2.92) BS02 rna ? GO:0000244 ... Q6P2Q9 30975767
    19 6qw6:5A (2.92) BS03 IHP ? GO:0000244 ... Q6P2Q9 30975767
    20 6qw6:5C (2.92) BS01 MG ? GO:0003924 ... Q15029 30975767
    21 6qw6:5C (2.92) BS02 GTP ? GO:0003924 ... Q15029 30975767
    22 6qw6:5D (2.92) BS01 rna ? GO:0000245 ... P83876 30975767
    23 6qw6:5J (2.92) BS01 rna ? GO:0000244 ... O94906 30975767
    24 6qw6:5J (2.92) BS02 rna ? GO:0000244 ... O94906 30975767
    25 6qw6:5O (2.92) BS01 rna ? GO:0000375 ... Q96DI7 30975767
    26 6qw6:5X (2.92) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 30975767
    27 6qw6:5b (2.92) BS01 rna ? GO:0000387 ... P14678 30975767
    28 6qw6:5e (2.92) BS01 rna ? GO:0000245 ... P62304 30975767
    29 6qw6:5f (2.92) BS01 rna ? GO:0000387 ... P62306 30975767
    30 6qw6:5g (2.92) BS01 rna ? GO:0000245 ... P62308 30975767
    31 6qw6:62 (2.92) BS01 rna ? GO:0000244 ... Q9Y333 30975767
    32 6qw6:63 (2.92) BS01 rna ? GO:0000398 ... P62310 30975767
    33 6qw6:64 (2.92) BS01 rna ? GO:0000387 ... Q9Y4Z0 30975767
    34 6qw6:66 (2.92) BS01 rna ? GO:0000398 ... P62312 30975767
    35 6qw6:68 (2.92) BS01 rna ? GO:0000398 ... O95777 30975767
    36 6qw6:R (2.92) BS01 rna ? GO:0000398 ... Q9BTD8 30975767
    37 6qw6:R (2.92) BS02 rna ? GO:0000398 ... Q9BTD8 30975767
    38 6qw6:S (2.92) BS01 rna ? GO:0000387 ... O43290 30975767
    39 6qw6:U (2.92) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 30975767
    40 6qw6:X (2.92) BS01 rna ? GO:0000398 ... Q8WVK2 30975767
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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