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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6q9d:A6 (3.8) BS01 ZMP ? GO:0005739 ... W5QC06 31492636
    2 6q9d:A7 (3.8) BS01 peptide ? GO:0005743 ... W5P0I2 31492636
    3 6q9d:A9 (3.8) BS01 NDP N/A N/A N/A 31492636
    4 6q9d:AA (3.8) BS01 ZMP ? GO:0006633 ... W5NQT7 31492636
    5 6q9d:S1 (3.8) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    6 6q9d:S1 (3.8) BS02 SF4 N/A GO:0008137 ... N/A 31492636
    7 6q9d:S1 (3.8) BS03 FES N/A GO:0008137 ... N/A 31492636
    8 6q9d:S2 (3.8) BS01 peptide N/A GO:0016651 ... N/A 31492636
    9 6q9d:S6 (3.8) BS01 ZN N/A GO:0006120 ... N/A 31492636
    10 6q9d:S7 (3.8) BS01 SF4 N/A GO:0008137 ... N/A 31492636
    11 6q9d:S8 (3.8) BS01 SF4 N/A GO:0016020 ... N/A 31492636
    12 6q9d:S8 (3.8) BS02 SF4 N/A GO:0016020 ... N/A 31492636
    13 6q9d:V1 (3.8) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 31492636
    14 6q9d:V1 (3.8) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 31492636
    15 6q9d:V2 (3.8) BS01 FES 7.1.1.2 GO:0016491 ... W5NRY1 31492636
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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