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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6q97:5 (3.9) BS01 rna ? GO:0003723 ... P0A832 30765567
    2 6q97:5 (3.9) BS02 rna ? GO:0003723 ... P0A832 30765567
    3 6q97:5 (3.9) BS03 rna ? GO:0003723 ... P0A832 30765567
    4 6q97:B (3.9) BS01 rna N/A GO:0003723 ... N/A 30765567
    5 6q97:C (3.9) BS01 rna ? GO:0000027 ... P60438 30765567
    6 6q97:D (3.9) BS01 rna ? GO:0001070 ... P60723 30765567
    7 6q97:E (3.9) BS01 rna ? GO:0000027 ... P62399 30765567
    8 6q97:E (3.9) BS02 rna ? GO:0000027 ... P62399 30765567
    9 6q97:E (3.9) BS03 rna ? GO:0000027 ... P62399 30765567
    10 6q97:F (3.9) BS01 rna ? GO:0000027 ... P0AG55 30765567
    11 6q97:G (3.9) BS01 rna ? GO:0002181 ... P0A7R1 30765567
    12 6q97:H (3.9) BS01 rna ? GO:0003735 ... P0A7J3 30765567
    13 6q97:I (3.9) BS01 rna ? GO:0000027 ... P0A7J7 30765567
    14 6q97:J (3.9) BS01 rna ? GO:0003729 ... A0A379XJZ2 30765567
    15 6q97:K (3.9) BS01 rna ? GO:0002181 ... P0ADY3 30765567
    16 6q97:K (3.9) BS02 rna ? GO:0002181 ... P0ADY3 30765567
    17 6q97:L (3.9) BS01 rna ? GO:0002181 ... P02413 30765567
    18 6q97:L (3.9) BS02 MG ? GO:0002181 ... P02413 30765567
    19 6q97:M (3.9) BS01 rna ? GO:0000027 ... P0ADY7 30765567
    20 6q97:N (3.9) BS01 rna ? GO:0000027 ... P0AG44 30765567
    21 6q97:O (3.9) BS01 rna ? GO:0002181 ... P0C018 30765567
    22 6q97:O (3.9) BS02 rna ? GO:0002181 ... P0C018 30765567
    23 6q97:P (3.9) BS01 rna ? GO:0000027 ... P0A7K6 30765567
    24 6q97:P (3.9) BS02 rna ? GO:0000027 ... P0A7K6 30765567
    25 6q97:Q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 30765567
    26 6q97:R (3.9) BS01 rna ? GO:0002181 ... P0AG48 30765567
    27 6q97:S (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    28 6q97:T (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 30765567
    29 6q97:U (3.9) BS01 rna ? GO:0000027 ... P60624 30765567
    30 6q97:V (3.9) BS01 rna ? GO:0000027 ... P68919 30765567
    31 6q97:W (3.9) BS01 rna ? GO:0003735 ... P0A7L8 30765567
    32 6q97:W (3.9) BS02 rna ? GO:0003735 ... P0A7L8 30765567
    33 6q97:X (3.9) BS01 rna ? GO:0000027 ... P0A7M2 30765567
    34 6q97:Y (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    35 6q97:Z (3.9) BS01 rna ? GO:0003735 ... A0A0E0XV41 30765567
    36 6q97:Z (3.9) BS02 rna ? GO:0003735 ... A0A0E0XV41 30765567
    37 6q97:a (3.9) BS01 rna ? GO:0002181 ... P0A7M9 30765567
    38 6q97:a (3.9) BS02 rna ? GO:0002181 ... P0A7M9 30765567
    39 6q97:b (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    40 6q97:c (3.9) BS01 rna ? GO:0000027 ... P0A7N9 30765567
    41 6q97:d (3.9) BS01 rna ? GO:0002181 ... P0A7P5 30765567
    42 6q97:e (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 30765567
    43 6q97:f (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    44 6q97:f (3.9) BS02 ZN N/A GO:0003735 ... N/A 30765567
    45 6q97:g (3.9) BS01 rna ? GO:0000028 ... P0A7V0 30765567
    46 6q97:h (3.9) BS01 rna ? GO:0003676 ... P0A7V3 30765567
    47 6q97:h (3.9) BS02 rna ? GO:0003676 ... P0A7V3 30765567
    48 6q97:i (3.9) BS01 rna ? GO:0000028 ... P0A7V8 30765567
    49 6q97:j (3.9) BS01 rna ? GO:0000028 ... P0A7W1 30765567
    50 6q97:k (3.9) BS01 rna ? GO:0003735 ... P02358 30765567
    51 6q97:l (3.9) BS01 rna ? GO:0003723 ... P02359 30765567
    52 6q97:l (3.9) BS02 rna ? GO:0003723 ... P02359 30765567
    53 6q97:m (3.9) BS01 rna ? GO:0000028 ... P0A7W7 30765567
    54 6q97:n (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    55 6q97:o (3.9) BS01 rna ? GO:0000049 ... P0A7R5 30765567
    56 6q97:p (3.9) BS01 rna ? GO:0002181 ... P0A7R9 30765567
    57 6q97:q (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    58 6q97:r (3.9) BS01 rna N/A GO:0003676 ... N/A 30765567
    59 6q97:r (3.9) BS02 rna N/A GO:0003676 ... N/A 30765567
    60 6q97:r (3.9) BS03 MG N/A GO:0003676 ... N/A 30765567
    61 6q97:s (3.9) BS01 rna ? GO:0000028 ... P0AG59 30765567
    62 6q97:t (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 30765567
    63 6q97:t (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 30765567
    64 6q97:u (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    65 6q97:v (3.9) BS01 rna ? GO:0000028 ... P0AG63 30765567
    66 6q97:w (3.9) BS01 rna ? GO:0003735 ... P0A7T7 30765567
    67 6q97:x (3.9) BS01 rna N/A GO:0003723 ... N/A 30765567
    68 6q97:y (3.9) BS01 rna ? GO:0000028 ... P0A7U7 30765567
    69 6q97:z (3.9) BS01 rna ? GO:0000028 ... P68679 30765567
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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