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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6q7m:A (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    2 6q7m:B (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    3 6q7m:C (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    4 6q7m:C (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    5 6q7m:D (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    6 6q7m:D (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    7 6q7m:E (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    8 6q7m:E (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    9 6q7m:F (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    10 6q7m:F (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    11 6q7m:G (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    12 6q7m:H (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    13 6q7m:H (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    14 6q7m:I (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    15 6q7m:J (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    16 6q7m:J (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    17 6q7m:K (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    18 6q7m:K (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    19 6q7m:L (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    20 6q7m:M (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    21 6q7m:M (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    22 6q7m:N (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    23 6q7m:O (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    24 6q7m:O (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    25 6q7m:P (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    26 6q7m:P (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    27 6q7m:Q (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    28 6q7m:Q (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    29 6q7m:R (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    30 6q7m:R (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    31 6q7m:S (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    32 6q7m:S (7.8) BS02 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    33 6q7m:T (7.8) BS01 PLP 4.1.1.18 GO:0003824 ... P0A9H3 31992852
    34 6q7m:V (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    35 6q7m:V (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    36 6q7m:W (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    37 6q7m:W (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    38 6q7m:X (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    39 6q7m:X (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    40 6q7m:Y (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    41 6q7m:Y (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    42 6q7m:Z (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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