Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 153 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6otr:QB (3.12) BS01 rna ? GO:0003735 ... P80371 31501867
    2 6otr:QC (3.12) BS01 rna ? GO:0003676 ... P80372 31501867
    3 6otr:QD (3.12) BS01 rna ? GO:0003723 ... P80373 31501867
    4 6otr:QD (3.12) BS02 SF4 ? GO:0003723 ... P80373 31501867
    5 6otr:QE (3.12) BS01 rna ? GO:0003723 ... Q5SHQ5 31501867
    6 6otr:QF (3.12) BS01 rna ? GO:0003735 ... Q5SLP8 31501867
    7 6otr:QG (3.12) BS01 rna ? GO:0000028 ... P17291 31501867
    8 6otr:QG (3.12) BS02 rna ? GO:0000028 ... P17291 31501867
    9 6otr:QH (3.12) BS01 rna ? GO:0003735 ... P0DOY9 31501867
    10 6otr:QI (3.12) BS01 rna ? GO:0000049 ... P80374 31501867
    11 6otr:QI (3.12) BS02 rna ? GO:0000049 ... P80374 31501867
    12 6otr:QJ (3.12) BS01 rna ? GO:0000049 ... Q5SHN7 31501867
    13 6otr:QK (3.12) BS01 rna ? GO:0003735 ... P80376 31501867
    14 6otr:QL (3.12) BS01 rna ? GO:0000049 ... Q5SHN3 31501867
    15 6otr:QM (3.12) BS01 rna ? GO:0000049 ... P80377 31501867
    16 6otr:QN (3.12) BS01 rna ? GO:0003735 ... P0DOY6 31501867
    17 6otr:QN (3.12) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    18 6otr:QO (3.12) BS01 rna ? GO:0003735 ... Q5SJ76 31501867
    19 6otr:QO (3.12) BS02 rna ? GO:0003735 ... Q5SJ76 31501867
    20 6otr:QP (3.12) BS01 rna ? GO:0003735 ... Q5SJH3 31501867
    21 6otr:QQ (3.12) BS01 rna ? GO:0003735 ... P0DOY7 31501867
    22 6otr:QR (3.12) BS01 rna ? GO:0003735 ... Q5SLQ0 31501867
    23 6otr:QS (3.12) BS01 rna ? GO:0000028 ... Q5SHP2 31501867
    24 6otr:QT (3.12) BS01 rna ? GO:0003723 ... P80380 31501867
    25 6otr:QY (3.12) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    26 6otr:QY (3.12) BS02 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    27 6otr:QY (3.12) BS03 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    28 6otr:QY (3.12) BS04 A3P 3.1.-.- GO:0004519 ... J7QFC0 31501867
    29 6otr:QZ (3.12) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    30 6otr:R0 (3.12) BS01 rna ? GO:0003735 ... P60493 31501867
    31 6otr:R0 (3.12) BS02 rna ? GO:0003735 ... P60493 31501867
    32 6otr:R0 (3.12) BS03 rna ? GO:0003735 ... P60493 31501867
    33 6otr:R1 (3.12) BS01 rna ? GO:0003735 ... P60494 31501867
    34 6otr:R2 (3.12) BS01 rna ? GO:0003735 ... Q5SHP6 31501867
    35 6otr:R3 (3.12) BS01 rna ? GO:0003735 ... Q5SHQ6 31501867
    36 6otr:R3 (3.12) BS02 rna ? GO:0003735 ... Q5SHQ6 31501867
    37 6otr:R4 (3.12) BS01 rna ? GO:0003735 ... Q5SJE1 31501867
    38 6otr:R5 (3.12) BS01 rna ? GO:0003735 ... P80339 31501867
    39 6otr:R6 (3.12) BS01 rna ? GO:0000049 ... P35871 31501867
    40 6otr:R6 (3.12) BS02 ZN ? GO:0000049 ... P35871 31501867
    41 6otr:R7 (3.12) BS01 rna ? GO:0003735 ... P80340 31501867
    42 6otr:R8 (3.12) BS01 rna ? GO:0003735 ... Q5SKU1 31501867
    43 6otr:R9 (3.12) BS01 rna ? GO:0003735 ... Q5SHR2 31501867
    44 6otr:R9 (3.12) BS02 ZN ? GO:0003735 ... Q5SHR2 31501867
    45 6otr:RD (3.12) BS01 rna ? GO:0002181 ... P60405 31501867
    46 6otr:RD (3.12) BS02 rna ? GO:0002181 ... P60405 31501867
    47 6otr:RD (3.12) BS03 MG ? GO:0002181 ... P60405 31501867
    48 6otr:RD (3.12) BS04 MG ? GO:0002181 ... P60405 31501867
    49 6otr:RE (3.12) BS01 rna ? GO:0003735 ... Q5SHN8 31501867
    50 6otr:RF (3.12) BS01 rna ? GO:0003735 ... Q5SHN9 31501867
    51 6otr:RG (3.12) BS01 rna ? GO:0000049 ... Q5SHQ0 31501867
    52 6otr:RG (3.12) BS02 rna ? GO:0000049 ... Q5SHQ0 31501867
    53 6otr:RG (3.12) BS03 rna ? GO:0000049 ... Q5SHQ0 31501867
    54 6otr:RH (3.12) BS01 rna ? GO:0002181 ... P0DOY8 31501867
    55 6otr:RI (3.12) BS01 rna ? GO:0003735 ... Q5SLQ1 31501867
    56 6otr:RN (3.12) BS01 rna ? GO:0003729 ... P60488 31501867
    57 6otr:RO (3.12) BS01 rna ? GO:0003735 ... Q5SHP8 31501867
    58 6otr:RO (3.12) BS02 rna ? GO:0003735 ... Q5SHP8 31501867
    59 6otr:RO (3.12) BS03 MG ? GO:0003735 ... Q5SHP8 31501867
    60 6otr:RP (3.12) BS01 rna ? GO:0003735 ... Q5SHQ7 31501867
    61 6otr:RQ (3.12) BS01 rna ? GO:0000049 ... P60489 31501867
    62 6otr:RQ (3.12) BS02 rna ? GO:0000049 ... P60489 31501867
    63 6otr:RQ (3.12) BS03 rna ? GO:0000049 ... P60489 31501867
    64 6otr:RR (3.12) BS01 rna ? GO:0003735 ... Q9Z9H5 31501867
    65 6otr:RS (3.12) BS01 rna ? GO:0003735 ... Q5SHQ4 31501867
    66 6otr:RS (3.12) BS02 rna ? GO:0003735 ... Q5SHQ4 31501867
    67 6otr:RT (3.12) BS01 rna ? GO:0003735 ... P60490 31501867
    68 6otr:RT (3.12) BS02 rna ? GO:0003735 ... P60490 31501867
    69 6otr:RU (3.12) BS01 rna ? GO:0000027 ... P60491 31501867
    70 6otr:RV (3.12) BS01 rna ? GO:0003723 ... P60492 31501867
    71 6otr:RW (3.12) BS01 rna ? GO:0003735 ... Q5SHP3 31501867
    72 6otr:RX (3.12) BS01 rna ? GO:0000027 ... Q5SHP0 31501867
    73 6otr:RY (3.12) BS01 rna ? GO:0003723 ... Q5SHP9 31501867
    74 6otr:RZ (3.12) BS01 rna ? GO:0003723 ... Q5SHZ1 31501867
    75 6otr:RZ (3.12) BS02 rna ? GO:0003723 ... Q5SHZ1 31501867
    76 6otr:XB (3.12) BS01 rna ? GO:0003735 ... P80371 31501867
    77 6otr:XC (3.12) BS01 rna ? GO:0003676 ... P80372 31501867
    78 6otr:XD (3.12) BS01 rna ? GO:0003723 ... P80373 31501867
    79 6otr:XD (3.12) BS02 SF4 ? GO:0003723 ... P80373 31501867
    80 6otr:XD (3.12) BS03 MG ? GO:0003723 ... P80373 31501867
    81 6otr:XE (3.12) BS01 rna ? GO:0003723 ... Q5SHQ5 31501867
    82 6otr:XF (3.12) BS01 rna ? GO:0003735 ... Q5SLP8 31501867
    83 6otr:XG (3.12) BS01 rna ? GO:0000028 ... P17291 31501867
    84 6otr:XG (3.12) BS02 rna ? GO:0000028 ... P17291 31501867
    85 6otr:XH (3.12) BS01 rna ? GO:0003735 ... P0DOY9 31501867
    86 6otr:XI (3.12) BS01 rna ? GO:0000049 ... P80374 31501867
    87 6otr:XJ (3.12) BS01 rna ? GO:0000049 ... Q5SHN7 31501867
    88 6otr:XK (3.12) BS01 rna ? GO:0003735 ... P80376 31501867
    89 6otr:XK (3.12) BS02 MG ? GO:0003735 ... P80376 31501867
    90 6otr:XL (3.12) BS01 rna ? GO:0000049 ... Q5SHN3 31501867
    91 6otr:XL (3.12) BS02 MG ? GO:0000049 ... Q5SHN3 31501867
    92 6otr:XM (3.12) BS01 rna ? GO:0000049 ... P80377 31501867
    93 6otr:XM (3.12) BS02 MG ? GO:0000049 ... P80377 31501867
    94 6otr:XN (3.12) BS01 rna ? GO:0003735 ... P0DOY6 31501867
    95 6otr:XN (3.12) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    96 6otr:XO (3.12) BS01 rna ? GO:0003735 ... Q5SJ76 31501867
    97 6otr:XO (3.12) BS02 rna ? GO:0003735 ... Q5SJ76 31501867
    98 6otr:XP (3.12) BS01 rna ? GO:0003735 ... Q5SJH3 31501867
    99 6otr:XQ (3.12) BS01 rna ? GO:0003735 ... P0DOY7 31501867
    100 6otr:XR (3.12) BS01 rna ? GO:0003735 ... Q5SLQ0 31501867
    101 6otr:XS (3.12) BS01 rna ? GO:0000028 ... Q5SHP2 31501867
    102 6otr:XT (3.12) BS01 rna ? GO:0003723 ... P80380 31501867
    103 6otr:XY (3.12) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    104 6otr:XY (3.12) BS02 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    105 6otr:XY (3.12) BS03 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    106 6otr:XY (3.12) BS04 A3P 3.1.-.- GO:0004519 ... J7QFC0 31501867
    107 6otr:Y0 (3.12) BS01 rna ? GO:0003735 ... P60493 31501867
    108 6otr:Y0 (3.12) BS02 rna ? GO:0003735 ... P60493 31501867
    109 6otr:Y0 (3.12) BS03 rna ? GO:0003735 ... P60493 31501867
    110 6otr:Y1 (3.12) BS01 rna ? GO:0003735 ... P60494 31501867
    111 6otr:Y1 (3.12) BS02 rna ? GO:0003735 ... P60494 31501867
    112 6otr:Y2 (3.12) BS01 rna ? GO:0003735 ... Q5SHP6 31501867
    113 6otr:Y3 (3.12) BS01 rna ? GO:0003735 ... Q5SHQ6 31501867
    114 6otr:Y3 (3.12) BS02 rna ? GO:0003735 ... Q5SHQ6 31501867
    115 6otr:Y4 (3.12) BS01 rna ? GO:0003735 ... Q5SJE1 31501867
    116 6otr:Y5 (3.12) BS01 rna ? GO:0003735 ... P80339 31501867
    117 6otr:Y6 (3.12) BS01 rna ? GO:0000049 ... P35871 31501867
    118 6otr:Y6 (3.12) BS02 ZN ? GO:0000049 ... P35871 31501867
    119 6otr:Y7 (3.12) BS01 rna ? GO:0003735 ... P80340 31501867
    120 6otr:Y8 (3.12) BS01 rna ? GO:0003735 ... Q5SKU1 31501867
    121 6otr:Y9 (3.12) BS01 rna ? GO:0003735 ... Q5SHR2 31501867
    122 6otr:Y9 (3.12) BS02 MG ? GO:0003735 ... Q5SHR2 31501867
    123 6otr:YD (3.12) BS01 rna ? GO:0002181 ... P60405 31501867
    124 6otr:YD (3.12) BS02 MG ? GO:0002181 ... P60405 31501867
    125 6otr:YE (3.12) BS01 rna ? GO:0003735 ... Q5SHN8 31501867
    126 6otr:YF (3.12) BS01 rna ? GO:0003735 ... Q5SHN9 31501867
    127 6otr:YF (3.12) BS02 MG ? GO:0003735 ... Q5SHN9 31501867
    128 6otr:YG (3.12) BS01 rna ? GO:0000049 ... Q5SHQ0 31501867
    129 6otr:YG (3.12) BS02 rna ? GO:0000049 ... Q5SHQ0 31501867
    130 6otr:YG (3.12) BS03 rna ? GO:0000049 ... Q5SHQ0 31501867
    131 6otr:YG (3.12) BS04 MG ? GO:0000049 ... Q5SHQ0 31501867
    132 6otr:YH (3.12) BS01 rna ? GO:0002181 ... P0DOY8 31501867
    133 6otr:YI (3.12) BS01 rna ? GO:0003735 ... Q5SLQ1 31501867
    134 6otr:YI (3.12) BS02 rna ? GO:0003735 ... Q5SLQ1 31501867
    135 6otr:YN (3.12) BS01 rna ? GO:0003729 ... P60488 31501867
    136 6otr:YO (3.12) BS01 rna ? GO:0003735 ... Q5SHP8 31501867
    137 6otr:YO (3.12) BS02 rna ? GO:0003735 ... Q5SHP8 31501867
    138 6otr:YP (3.12) BS01 rna ? GO:0003735 ... Q5SHQ7 31501867
    139 6otr:YQ (3.12) BS01 rna ? GO:0000049 ... P60489 31501867
    140 6otr:YQ (3.12) BS02 rna ? GO:0000049 ... P60489 31501867
    141 6otr:YR (3.12) BS01 rna ? GO:0003735 ... Q9Z9H5 31501867
    142 6otr:YS (3.12) BS01 rna ? GO:0003735 ... Q5SHQ4 31501867
    143 6otr:YS (3.12) BS02 rna ? GO:0003735 ... Q5SHQ4 31501867
    144 6otr:YS (3.12) BS03 MG ? GO:0003735 ... Q5SHQ4 31501867
    145 6otr:YT (3.12) BS01 rna ? GO:0003735 ... P60490 31501867
    146 6otr:YT (3.12) BS02 rna ? GO:0003735 ... P60490 31501867
    147 6otr:YU (3.12) BS01 rna ? GO:0000027 ... P60491 31501867
    148 6otr:YV (3.12) BS01 rna ? GO:0003723 ... P60492 31501867
    149 6otr:YW (3.12) BS01 rna ? GO:0003735 ... Q5SHP3 31501867
    150 6otr:YX (3.12) BS01 rna ? GO:0000027 ... Q5SHP0 31501867
    151 6otr:YY (3.12) BS01 rna ? GO:0003723 ... Q5SHP9 31501867
    152 6otr:YZ (3.12) BS01 rna ? GO:0003723 ... Q5SHZ1 31501867
    153 6otr:YZ (3.12) BS02 rna ? GO:0003723 ... Q5SHZ1 31501867
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218