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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 187 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ord:QB (3.1) BS01 rna ? GO:0003735 ... P80371 32601241
    2 6ord:QB (3.1) BS02 MG ? GO:0003735 ... P80371 32601241
    3 6ord:QC (3.1) BS01 rna ? GO:0003676 ... P80372 32601241
    4 6ord:QD (3.1) BS01 rna ? GO:0003723 ... P80373 32601241
    5 6ord:QD (3.1) BS02 SF4 ? GO:0003723 ... P80373 32601241
    6 6ord:QD (3.1) BS03 MG ? GO:0003723 ... P80373 32601241
    7 6ord:QD (3.1) BS04 MG ? GO:0003723 ... P80373 32601241
    8 6ord:QE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 32601241
    9 6ord:QF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 32601241
    10 6ord:QG (3.1) BS01 rna ? GO:0000028 ... P17291 32601241
    11 6ord:QH (3.1) BS01 rna ? GO:0003735 ... P0DOY9 32601241
    12 6ord:QI (3.1) BS01 rna ? GO:0000049 ... P80374 32601241
    13 6ord:QI (3.1) BS02 rna ? GO:0000049 ... P80374 32601241
    14 6ord:QJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 32601241
    15 6ord:QK (3.1) BS01 rna ? GO:0003735 ... P80376 32601241
    16 6ord:QL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 32601241
    17 6ord:QM (3.1) BS01 rna ? GO:0000049 ... P80377 32601241
    18 6ord:QM (3.1) BS02 MG ? GO:0000049 ... P80377 32601241
    19 6ord:QN (3.1) BS01 rna ? GO:0003735 ... P0DOY6 32601241
    20 6ord:QN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    21 6ord:QO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 32601241
    22 6ord:QO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 32601241
    23 6ord:QP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 32601241
    24 6ord:QQ (3.1) BS01 rna ? GO:0003735 ... P0DOY7 32601241
    25 6ord:QR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 32601241
    26 6ord:QS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 32601241
    27 6ord:QT (3.1) BS01 rna ? GO:0003723 ... P80380 32601241
    28 6ord:QT (3.1) BS02 MG ? GO:0003723 ... P80380 32601241
    29 6ord:R0 (3.1) BS01 rna ? GO:0003735 ... P60493 32601241
    30 6ord:R0 (3.1) BS02 rna ? GO:0003735 ... P60493 32601241
    31 6ord:R0 (3.1) BS03 rna ? GO:0003735 ... P60493 32601241
    32 6ord:R0 (3.1) BS04 MG ? GO:0003735 ... P60493 32601241
    33 6ord:R0 (3.1) BS05 MG ? GO:0003735 ... P60493 32601241
    34 6ord:R1 (3.1) BS01 rna ? GO:0003735 ... P60494 32601241
    35 6ord:R2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 32601241
    36 6ord:R3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 32601241
    37 6ord:R3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 32601241
    38 6ord:R3 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 32601241
    39 6ord:R4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 32601241
    40 6ord:R4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 32601241
    41 6ord:R5 (3.1) BS01 rna ? GO:0003735 ... P80339 32601241
    42 6ord:R5 (3.1) BS02 ZN ? GO:0003735 ... P80339 32601241
    43 6ord:R6 (3.1) BS01 rna ? GO:0000049 ... P35871 32601241
    44 6ord:R6 (3.1) BS02 ZN ? GO:0000049 ... P35871 32601241
    45 6ord:R7 (3.1) BS01 rna ? GO:0003735 ... P80340 32601241
    46 6ord:R7 (3.1) BS02 MG ? GO:0003735 ... P80340 32601241
    47 6ord:R8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 32601241
    48 6ord:R9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 32601241
    49 6ord:R9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 32601241
    50 6ord:RD (3.1) BS01 rna ? GO:0002181 ... P60405 32601241
    51 6ord:RD (3.1) BS02 rna ? GO:0002181 ... P60405 32601241
    52 6ord:RD (3.1) BS03 MG ? GO:0002181 ... P60405 32601241
    53 6ord:RD (3.1) BS04 MG ? GO:0002181 ... P60405 32601241
    54 6ord:RD (3.1) BS05 MG ? GO:0002181 ... P60405 32601241
    55 6ord:RD (3.1) BS06 MG ? GO:0002181 ... P60405 32601241
    56 6ord:RE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 32601241
    57 6ord:RE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 32601241
    58 6ord:RE (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 32601241
    59 6ord:RF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 32601241
    60 6ord:RF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    61 6ord:RF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 32601241
    62 6ord:RF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 32601241
    63 6ord:RG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 32601241
    64 6ord:RG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 32601241
    65 6ord:RG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 32601241
    66 6ord:RG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 32601241
    67 6ord:RG (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 32601241
    68 6ord:RH (3.1) BS01 rna ? GO:0002181 ... P0DOY8 32601241
    69 6ord:RI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 32601241
    70 6ord:RN (3.1) BS01 rna ? GO:0003729 ... P60488 32601241
    71 6ord:RO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 32601241
    72 6ord:RO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 32601241
    73 6ord:RP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 32601241
    74 6ord:RQ (3.1) BS01 rna ? GO:0000049 ... P60489 32601241
    75 6ord:RQ (3.1) BS02 rna ? GO:0000049 ... P60489 32601241
    76 6ord:RQ (3.1) BS03 MG ? GO:0000049 ... P60489 32601241
    77 6ord:RQ (3.1) BS04 MG ? GO:0000049 ... P60489 32601241
    78 6ord:RR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 32601241
    79 6ord:RS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 32601241
    80 6ord:RS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 32601241
    81 6ord:RT (3.1) BS01 rna ? GO:0003735 ... P60490 32601241
    82 6ord:RT (3.1) BS02 rna ? GO:0003735 ... P60490 32601241
    83 6ord:RU (3.1) BS01 rna ? GO:0000027 ... P60491 32601241
    84 6ord:RU (3.1) BS02 MG ? GO:0000027 ... P60491 32601241
    85 6ord:RU (3.1) BS03 MG ? GO:0000027 ... P60491 32601241
    86 6ord:RV (3.1) BS01 rna ? GO:0003723 ... P60492 32601241
    87 6ord:RV (3.1) BS02 MG ? GO:0003723 ... P60492 32601241
    88 6ord:RV (3.1) BS03 MG ? GO:0003723 ... P60492 32601241
    89 6ord:RV (3.1) BS04 MG ? GO:0003723 ... P60492 32601241
    90 6ord:RW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 32601241
    91 6ord:RW (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 32601241
    92 6ord:RX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 32601241
    93 6ord:RY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 32601241
    94 6ord:RY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 32601241
    95 6ord:RZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 32601241
    96 6ord:RZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 32601241
    97 6ord:XB (3.1) BS01 rna ? GO:0003735 ... P80371 32601241
    98 6ord:XC (3.1) BS01 rna ? GO:0003676 ... P80372 32601241
    99 6ord:XD (3.1) BS01 rna ? GO:0003723 ... P80373 32601241
    100 6ord:XD (3.1) BS02 SF4 ? GO:0003723 ... P80373 32601241
    101 6ord:XE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 32601241
    102 6ord:XF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 32601241
    103 6ord:XF (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 32601241
    104 6ord:XG (3.1) BS01 rna ? GO:0000028 ... P17291 32601241
    105 6ord:XH (3.1) BS01 rna ? GO:0003735 ... P0DOY9 32601241
    106 6ord:XI (3.1) BS01 rna ? GO:0000049 ... P80374 32601241
    107 6ord:XJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 32601241
    108 6ord:XK (3.1) BS01 rna ? GO:0003735 ... P80376 32601241
    109 6ord:XK (3.1) BS02 MG ? GO:0003735 ... P80376 32601241
    110 6ord:XL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 32601241
    111 6ord:XL (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 32601241
    112 6ord:XM (3.1) BS01 rna ? GO:0000049 ... P80377 32601241
    113 6ord:XM (3.1) BS02 rna ? GO:0000049 ... P80377 32601241
    114 6ord:XN (3.1) BS01 rna ? GO:0003735 ... P0DOY6 32601241
    115 6ord:XN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    116 6ord:XO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 32601241
    117 6ord:XO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 32601241
    118 6ord:XP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 32601241
    119 6ord:XQ (3.1) BS01 rna ? GO:0003735 ... P0DOY7 32601241
    120 6ord:XR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 32601241
    121 6ord:XS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 32601241
    122 6ord:XT (3.1) BS01 rna ? GO:0003723 ... P80380 32601241
    123 6ord:Y0 (3.1) BS01 rna ? GO:0003735 ... P60493 32601241
    124 6ord:Y0 (3.1) BS02 rna ? GO:0003735 ... P60493 32601241
    125 6ord:Y0 (3.1) BS03 rna ? GO:0003735 ... P60493 32601241
    126 6ord:Y1 (3.1) BS01 rna ? GO:0003735 ... P60494 32601241
    127 6ord:Y2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 32601241
    128 6ord:Y3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 32601241
    129 6ord:Y3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 32601241
    130 6ord:Y4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 32601241
    131 6ord:Y4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 32601241
    132 6ord:Y5 (3.1) BS01 rna ? GO:0003735 ... P80339 32601241
    133 6ord:Y5 (3.1) BS02 ZN ? GO:0003735 ... P80339 32601241
    134 6ord:Y6 (3.1) BS01 rna ? GO:0000049 ... P35871 32601241
    135 6ord:Y6 (3.1) BS02 ZN ? GO:0000049 ... P35871 32601241
    136 6ord:Y7 (3.1) BS01 rna ? GO:0003735 ... P80340 32601241
    137 6ord:Y7 (3.1) BS02 MG ? GO:0003735 ... P80340 32601241
    138 6ord:Y8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 32601241
    139 6ord:Y9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 32601241
    140 6ord:Y9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 32601241
    141 6ord:YD (3.1) BS01 rna ? GO:0002181 ... P60405 32601241
    142 6ord:YD (3.1) BS02 rna ? GO:0002181 ... P60405 32601241
    143 6ord:YD (3.1) BS03 MG ? GO:0002181 ... P60405 32601241
    144 6ord:YD (3.1) BS04 MG ? GO:0002181 ... P60405 32601241
    145 6ord:YD (3.1) BS05 MG ? GO:0002181 ... P60405 32601241
    146 6ord:YD (3.1) BS06 MG ? GO:0002181 ... P60405 32601241
    147 6ord:YD (3.1) BS07 MG ? GO:0002181 ... P60405 32601241
    148 6ord:YE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 32601241
    149 6ord:YE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 32601241
    150 6ord:YE (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 32601241
    151 6ord:YF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 32601241
    152 6ord:YF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    153 6ord:YF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 32601241
    154 6ord:YG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 32601241
    155 6ord:YG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 32601241
    156 6ord:YG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 32601241
    157 6ord:YG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 32601241
    158 6ord:YG (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 32601241
    159 6ord:YH (3.1) BS01 rna ? GO:0002181 ... P0DOY8 32601241
    160 6ord:YI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 32601241
    161 6ord:YI (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 32601241
    162 6ord:YI (3.1) BS03 MG ? GO:0003735 ... Q5SLQ1 32601241
    163 6ord:YN (3.1) BS01 rna ? GO:0003729 ... P60488 32601241
    164 6ord:YO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 32601241
    165 6ord:YO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 32601241
    166 6ord:YP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 32601241
    167 6ord:YQ (3.1) BS01 rna ? GO:0000049 ... P60489 32601241
    168 6ord:YQ (3.1) BS02 rna ? GO:0000049 ... P60489 32601241
    169 6ord:YQ (3.1) BS03 rna ? GO:0000049 ... P60489 32601241
    170 6ord:YQ (3.1) BS04 MG ? GO:0000049 ... P60489 32601241
    171 6ord:YR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 32601241
    172 6ord:YS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 32601241
    173 6ord:YS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 32601241
    174 6ord:YT (3.1) BS01 rna ? GO:0003735 ... P60490 32601241
    175 6ord:YT (3.1) BS02 rna ? GO:0003735 ... P60490 32601241
    176 6ord:YU (3.1) BS01 rna ? GO:0000027 ... P60491 32601241
    177 6ord:YU (3.1) BS02 MG ? GO:0000027 ... P60491 32601241
    178 6ord:YV (3.1) BS01 rna ? GO:0003723 ... P60492 32601241
    179 6ord:YV (3.1) BS02 MG ? GO:0003723 ... P60492 32601241
    180 6ord:YV (3.1) BS03 MG ? GO:0003723 ... P60492 32601241
    181 6ord:YW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 32601241
    182 6ord:YW (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 32601241
    183 6ord:YX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 32601241
    184 6ord:YY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 32601241
    185 6ord:YY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 32601241
    186 6ord:YZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 32601241
    187 6ord:YZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 32601241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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